Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CQZ96_RS12210 Genome accession   NZ_CP058272
Coordinates   2615986..2617401 (+) Length   471 a.a.
NCBI ID   WP_105714623.1    Uniprot ID   -
Organism   Acinetobacter sp. MYb10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2610986..2622401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS12190 (CQZ96_012220) thrC 2611019..2612158 (+) 1140 WP_105714625.1 threonine synthase -
  CQZ96_RS12195 (CQZ96_012225) pbpG 2612440..2613495 (-) 1056 WP_004718389.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CQZ96_RS12200 (CQZ96_012230) - 2613728..2614363 (+) 636 WP_004718392.1 response regulator -
  CQZ96_RS12205 (CQZ96_012235) pilS 2614400..2615968 (+) 1569 WP_105714624.1 sensor histidine kinase Regulator
  CQZ96_RS12210 (CQZ96_012240) pilR 2615986..2617401 (+) 1416 WP_105714623.1 sigma-54-dependent transcriptional regulator Regulator
  CQZ96_RS12215 (CQZ96_012245) - 2617682..2618860 (-) 1179 WP_105714622.1 S41 family peptidase -
  CQZ96_RS12220 (CQZ96_012250) gpmI 2618891..2620438 (-) 1548 WP_105714621.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  CQZ96_RS12225 (CQZ96_012255) lptG 2620593..2621663 (-) 1071 WP_105714620.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53376.52 Da        Isoelectric Point: 6.5046

>NTDB_id=463357 CQZ96_RS12210 WP_105714623.1 2615986..2617401(+) (pilR) [Acinetobacter sp. MYb10]
MTTRQPLVLLVDDEQDLCMLMQMSLSRMGIKTHMAHHLQQAKYFFSEYKYDACITDLNLPDGSGLDLVKHVSQHYPKTPI
AVLTAYGNMEIAIASLKAGAFDFVSKPINQLHLQQLLQKALHVPQLRETISDAPLEESMLIGDSQVIRKLRESIKKIARS
QAPVFITGESGTGKEVVANLIHLLSNRSDSPFVAINCGAISEELMESELFGHKKGCFSGATQDKQGLIQAANGGTLFLDE
IAELSLAMQAKLLRALQEKKIRPLGSDTEIEVDFRIISATHQDIEAFVEQGKFRHDLFFRIHVMDIVLPPLRERDCDILI
LANHFLQQICTEWRISTKSFTEQAKAFLLQQHYSGNVRELRNIIEKAITMSDEDYIDIQQLQPAPHRGIHKVEQHDLMQS
KALPIVMPNKAQNIPEEGLEQYLEKVEKEVLLSALNQTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTDDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=463357 CQZ96_RS12210 WP_105714623.1 2615986..2617401(+) (pilR) [Acinetobacter sp. MYb10]
ATGACTACACGACAACCATTGGTTTTACTTGTAGATGATGAACAAGATTTATGTATGTTAATGCAAATGAGCCTTTCTCG
GATGGGCATCAAAACGCATATGGCACACCATTTACAACAAGCCAAATATTTTTTTAGTGAATATAAATATGATGCCTGTA
TTACCGATTTAAACCTCCCTGATGGCAGTGGTTTAGATTTGGTTAAGCATGTATCACAGCATTATCCTAAAACGCCTATT
GCAGTCTTAACTGCATATGGAAATATGGAAATTGCGATTGCCTCGCTGAAAGCAGGTGCTTTTGATTTTGTCAGTAAACC
GATTAACCAATTACATCTGCAACAGCTTTTACAAAAAGCTTTGCATGTACCACAGTTAAGGGAAACTATCAGCGATGCGC
CGCTTGAGGAATCAATGCTCATCGGTGATTCACAGGTCATTCGTAAGTTAAGAGAATCGATTAAAAAAATTGCTCGTTCA
CAAGCACCCGTATTTATCACGGGTGAATCTGGAACAGGTAAAGAAGTAGTTGCCAATCTCATCCATCTACTCAGCAACCG
CAGTGATAGCCCTTTTGTTGCGATTAATTGTGGTGCAATTTCTGAAGAGTTGATGGAGAGTGAGCTATTTGGGCATAAGA
AAGGCTGTTTTTCAGGTGCAACTCAAGACAAACAGGGCCTTATTCAAGCTGCCAATGGGGGCACCCTGTTTTTAGATGAA
ATTGCAGAACTTTCTTTGGCCATGCAAGCCAAACTGTTACGAGCTTTACAAGAAAAGAAAATTCGTCCTCTAGGCAGTGA
TACCGAAATCGAAGTTGATTTTCGTATTATCAGTGCAACACATCAAGACATTGAAGCATTCGTTGAACAAGGCAAATTCC
GTCATGATCTGTTCTTTAGAATTCATGTGATGGATATTGTGCTCCCGCCATTGCGCGAACGTGATTGTGATATTTTGATT
TTAGCCAATCATTTTCTTCAGCAAATTTGTACAGAATGGCGTATTTCAACCAAGTCTTTCACTGAACAAGCCAAAGCTTT
TCTTTTACAACAACATTACTCAGGCAATGTTCGTGAATTACGCAATATCATTGAAAAAGCCATTACCATGAGTGATGAAG
ACTATATTGATATTCAACAGCTACAACCAGCTCCACATCGTGGTATCCACAAAGTCGAACAGCATGATCTGATGCAAAGT
AAAGCCTTGCCGATCGTCATGCCGAATAAAGCACAAAACATTCCAGAAGAAGGTTTGGAGCAATATTTGGAAAAAGTCGA
AAAAGAAGTGCTGTTATCTGCATTAAATCAAACCCATTGGAATCGCACTTTAGCTGCGAAGAAATTGGGCATGACGTTTC
GTTCTTTACGTTACCGTTTGAAAAAGTTTGGTTTAGATACCGATGATGATGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

69.002

100

0.69
  pilR Pseudomonas aeruginosa PAK

47.835

98.089

0.469