Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CQZ96_RS12205 Genome accession   NZ_CP058272
Coordinates   2614400..2615968 (+) Length   522 a.a.
NCBI ID   WP_105714624.1    Uniprot ID   -
Organism   Acinetobacter sp. MYb10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2609400..2620968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS12185 (CQZ96_012215) - 2609579..2610883 (+) 1305 WP_004718385.1 homoserine dehydrogenase -
  CQZ96_RS12190 (CQZ96_012220) thrC 2611019..2612158 (+) 1140 WP_105714625.1 threonine synthase -
  CQZ96_RS12195 (CQZ96_012225) pbpG 2612440..2613495 (-) 1056 WP_004718389.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CQZ96_RS12200 (CQZ96_012230) - 2613728..2614363 (+) 636 WP_004718392.1 response regulator -
  CQZ96_RS12205 (CQZ96_012235) pilS 2614400..2615968 (+) 1569 WP_105714624.1 sensor histidine kinase Regulator
  CQZ96_RS12210 (CQZ96_012240) pilR 2615986..2617401 (+) 1416 WP_105714623.1 sigma-54-dependent transcriptional regulator Regulator
  CQZ96_RS12215 (CQZ96_012245) - 2617682..2618860 (-) 1179 WP_105714622.1 S41 family peptidase -
  CQZ96_RS12220 (CQZ96_012250) gpmI 2618891..2620438 (-) 1548 WP_105714621.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59576.21 Da        Isoelectric Point: 6.2670

>NTDB_id=463356 CQZ96_RS12205 WP_105714624.1 2614400..2615968(+) (pilS) [Acinetobacter sp. MYb10]
MSPTVTVPIYQTIYRLGTLYSGYRLVIAFCLVIIFLITLEHQPVHYEYPSLYFYSLTAFTLVAALQMMLLKFYPHGVGRQ
FIGFFIVDIPFLSTLVFALNGPNLAISILFVIAVFTANFLLSKNKALFVTLVSVIAIIYQQFLGSFFDFSNLNNISNSAL
LAFLFFMVYGIGQIAINRFQVLESLNTYQSLELFKLQNINRYILEQIEVGYLVLDEKCKIIVSNPAACLLLGISPLYAHE
QYHLSSFQPDLYEILKDALLRDGERFQFESQQSSYTVDIHVQKLIVPHQALTLLVLEDAQKINQKVQQLKLAALGQLSAS
IAHEIRNPLAAIAQANDLFISSDPEQQIILNQMITKQTIRINNIIKDTLDMAKNKKIHTSKINFQEFVDDLLRHDLGDAQ
EKIKLEIQADVWIYFDDSHLRQVLINLVRNALRHNDQNAEHILVQTFKNESHIYIDVIDYGKGVTKQDLSQLFQPFFSTE
INGTGLGLYLSQTICEANQAKLIYVEQKQQGACFRIECPLMD

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=463356 CQZ96_RS12205 WP_105714624.1 2614400..2615968(+) (pilS) [Acinetobacter sp. MYb10]
ATGTCGCCTACGGTAACGGTTCCTATTTATCAAACAATTTACCGTCTAGGCACACTGTATTCAGGCTATAGATTGGTTAT
TGCCTTTTGCTTAGTCATTATTTTTCTGATTACCCTTGAACACCAACCCGTACATTACGAATATCCCAGCTTATATTTTT
ATTCTCTAACCGCATTTACGCTGGTCGCAGCATTACAAATGATGCTGCTCAAATTCTACCCGCATGGGGTTGGACGGCAA
TTTATCGGTTTTTTTATTGTTGATATTCCCTTTCTAAGTACCTTGGTATTTGCCCTCAATGGGCCAAATTTAGCCATCAG
TATTTTGTTCGTGATTGCCGTTTTTACCGCAAATTTTCTGCTGAGTAAAAATAAAGCGCTATTCGTAACACTGGTTTCTG
TGATTGCAATTATTTACCAACAGTTTTTAGGCAGCTTCTTCGATTTTTCAAATTTAAATAATATTAGTAACAGTGCCTTA
TTGGCTTTTTTATTTTTTATGGTCTATGGCATTGGACAGATTGCAATTAATCGCTTCCAAGTTTTAGAGTCGTTAAATAC
CTATCAATCTCTTGAATTATTTAAGTTACAGAACATTAACCGCTATATTTTAGAACAGATTGAAGTCGGTTATTTGGTGC
TCGATGAAAAATGCAAAATTATCGTCAGTAACCCAGCTGCCTGTTTACTTTTGGGTATTTCACCACTTTACGCACATGAG
CAATATCATTTATCCAGCTTTCAACCGGACTTATATGAAATCTTAAAAGATGCCTTGTTACGTGATGGCGAACGCTTCCA
ATTTGAATCCCAACAGTCCTCGTATACAGTCGATATTCACGTACAAAAATTGATTGTTCCGCATCAAGCACTCACGCTTT
TAGTCCTCGAAGATGCACAAAAAATTAATCAAAAGGTACAACAACTCAAACTTGCCGCACTTGGTCAATTATCGGCCAGT
ATTGCCCATGAAATTCGCAATCCGCTTGCCGCCATTGCGCAGGCCAATGATCTCTTTATCAGCAGTGATCCAGAACAACA
AATTATTTTAAATCAAATGATTACCAAACAGACCATCCGTATCAATAATATTATTAAAGATACCTTAGATATGGCAAAAA
ATAAAAAGATCCATACCTCAAAAATTAATTTTCAAGAATTTGTTGATGACTTATTACGCCATGATTTAGGGGATGCTCAG
GAAAAAATCAAATTAGAAATTCAAGCTGATGTTTGGATCTATTTTGATGACTCCCACCTCCGACAAGTTTTAATCAATTT
AGTCCGTAATGCATTACGTCATAATGATCAAAATGCTGAACACATTTTAGTGCAAACGTTTAAAAATGAATCACACATAT
ATATTGATGTGATTGATTATGGGAAAGGCGTCACAAAACAAGATCTTTCGCAATTATTTCAACCATTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTGTACCTATCGCAGACGATATGCGAAGCGAATCAAGCGAAACTAATTTACGTAGAGCA
AAAACAACAAGGGGCGTGCTTCCGTATCGAATGCCCACTCATGGATTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.594

98.084

0.575