Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CQZ96_RS04685 Genome accession   NZ_CP058272
Coordinates   983431..984141 (+) Length   236 a.a.
NCBI ID   WP_004721139.1    Uniprot ID   A0A077KYT9
Organism   Acinetobacter sp. MYb10     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 978431..989141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQZ96_RS04655 (CQZ96_004655) - 979497..979964 (-) 468 WP_056510544.1 hypothetical protein -
  CQZ96_RS04660 (CQZ96_004660) - 979966..980580 (-) 615 WP_056510542.1 hypothetical protein -
  CQZ96_RS04665 (CQZ96_004665) - 980584..981135 (-) 552 WP_105712850.1 PAAR domain-containing protein -
  CQZ96_RS04670 (CQZ96_004670) - 981128..981571 (-) 444 WP_105712851.1 PAAR domain-containing protein -
  CQZ96_RS04675 (CQZ96_004675) - 981869..982672 (+) 804 WP_416377030.1 peptidoglycan DD-metalloendopeptidase family protein -
  CQZ96_RS04680 (CQZ96_004680) - 982857..983279 (-) 423 WP_056510534.1 OsmC family protein -
  CQZ96_RS04685 (CQZ96_004685) crp 983431..984141 (+) 711 WP_004721139.1 cAMP-activated global transcriptional regulator CRP Regulator
  CQZ96_RS04690 (CQZ96_004690) - 984471..985520 (+) 1050 WP_056510532.1 NADP(H)-dependent aldo-keto reductase -
  CQZ96_RS04695 (CQZ96_004695) - 985615..986400 (-) 786 WP_004721143.1 M48 family metallopeptidase -
  CQZ96_RS04700 (CQZ96_004700) - 986512..986817 (-) 306 WP_056510530.1 hypothetical protein -
  CQZ96_RS04705 (CQZ96_004705) - 986958..987749 (-) 792 WP_105712853.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26563.18 Da        Isoelectric Point: 4.6726

>NTDB_id=463345 CQZ96_RS04685 WP_004721139.1 983431..984141(+) (crp) [Acinetobacter sp. MYb10]
MSSNFAQLSTDALSPGQLPESVKALLKRAHINRFPKRSTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEQNPQRTAEVRTRDVCEIAEISYDNFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDVSLEESNFSEDELSTDDE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=463345 CQZ96_RS04685 WP_004721139.1 983431..984141(+) (crp) [Acinetobacter sp. MYb10]
ATGTCTTCTAATTTTGCACAACTTAGTACAGATGCTTTGTCTCCTGGTCAACTACCTGAGTCAGTCAAAGCTTTGCTCAA
AAGAGCCCACATCAATCGTTTTCCAAAACGCTCAACGATTATTGATGCAGGTTCAGAGTCAAAATCACTGTATTTAATTT
TAAAAGGTTCAGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTTGTTGCATATTTGAACCCTGGGGACTTT
TTTGGGGAAATGGGATTATTTGAGCAGAATCCACAACGTACTGCGGAAGTAAGAACCCGTGACGTATGTGAAATTGCTGA
AATTTCATATGACAATTTCCACGAAATTAGTAAACAATATCCTGACTTAAGTTATGCCGTATTTGCACAACTTGTTCGTC
GTTTAAAAAATACAACACGCAAAGTAACTGACCTTGCATTTATTGATGTATCTGGTCGTATTGCACGTTGTTTAATAGAT
CTTTCAGCACAGCCTGAAGCGATGATCTTGCCAAACGGCCGCCAAATCCGCATTACTCGCCAAGAAATTGGTCGTATCGT
GGGTTGTTCCCGTGAAATGGTTGGTCGTGTTCTAAAAACACTTGAAGAACAAGGCATGATCGAAACCGACGGTAAAGCCA
TCCTTATATTTGATGTATCTTTGGAAGAATCTAATTTTTCTGAAGACGAACTAAGCACAGATGATGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077KYT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.304

97.458

0.89
  crp Vibrio cholerae strain A1552

48.293

86.864

0.419
  crp Haemophilus influenzae Rd KW20

48.705

81.78

0.398