Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   HW271_RS06720 Genome accession   NZ_CP058258
Coordinates   1374745..1376727 (-) Length   660 a.a.
NCBI ID   WP_178895377.1    Uniprot ID   -
Organism   Streptococcus sp. oral taxon 061 strain F0704     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1369745..1381727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW271_RS06700 (HW271_06700) gpsB 1370941..1371276 (-) 336 WP_006150353.1 cell division regulator GpsB -
  HW271_RS06705 (HW271_06705) - 1371346..1371873 (-) 528 WP_178895374.1 SLOG family protein -
  HW271_RS06710 (HW271_06710) recU 1371941..1372537 (+) 597 WP_178895375.1 Holliday junction resolvase RecU -
  HW271_RS06715 (HW271_06715) pbp1a 1372534..1374639 (+) 2106 WP_178895376.1 penicillin-binding protein PBP1A -
  HW271_RS06720 (HW271_06720) amiA 1374745..1376727 (-) 1983 WP_178895377.1 peptide ABC transporter substrate-binding protein Regulator
  HW271_RS06725 (HW271_06725) - 1376933..1377415 (+) 483 WP_178895378.1 S-ribosylhomocysteine lyase -
  HW271_RS06730 (HW271_06730) - 1377471..1379573 (-) 2103 WP_178895379.1 AAA family ATPase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73115.63 Da        Isoelectric Point: 4.5803

>NTDB_id=463236 HW271_RS06720 WP_178895377.1 1374745..1376727(-) (amiA) [Streptococcus sp. oral taxon 061 strain F0704]
MKFSKVMALAGVTLLASGVLAACSGSGSSAKGEKTFSYVYETDPDSLNYLTTGKAAVANITSNVVDGLMENDRYGNFVPS
MAEDWSVSQDGLTYTYTIRKDAKWYTSEGEEYAPVKAQDFVTGLKYAADNKSEALYLVQESIKGLDAYVKGEVKDFSEVG
IKAIDDQTVQYTLNKPESFWNSKTTMGILAPVNEEFLTSKGSDFAKATDPSSILYNGPFLLKSLVAKSSVEFEKNPNYWD
KDNVHIDKVKLSFWDGQDTGKLADTFKDGGFSMARLFPTSAGYPELEKEFKDNIVYTPQDSATFLVGTNIDRQSYKYTSK
TTDEQKTSTKKALLNKDFRQAIAFGFDRTAYASQVNGESGASKLLRNLFVPPTFVQADGKNFGDLVKEKLVTYGDEWKDV
NLDDAQDGLYNPEKAKAEFAKAKTALQAEGVQFPIHLDMPVDQTNTTKVQRVQSLKQSLEATLGTDNVVVDIQQLQKDEV
LNVTYFAETAAGEDWDLSDNVGWSPDYIDPSTYLDIIKPSVGENTKTYLGFDAGTNNAAAKQVGLEDYEKMVVEAGNENT
DVSKRYDKYAAAQAWLTDSALIIPTTSQTGRPMLSKMVPYTLPFAYSGNKGMSEALLYKYLELQDKPVTADEYQKAQDKW
KKEKEESNKKAQEDLANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=463236 HW271_RS06720 WP_178895377.1 1374745..1376727(-) (amiA) [Streptococcus sp. oral taxon 061 strain F0704]
ATGAAATTTTCAAAAGTAATGGCCCTAGCAGGAGTGACTCTGTTAGCGTCAGGTGTTTTGGCAGCTTGTTCAGGTTCAGG
CTCTAGTGCAAAAGGTGAGAAAACTTTTTCTTACGTTTATGAAACAGATCCAGACAGCCTCAACTATCTGACAACAGGTA
AGGCTGCAGTTGCGAATATCACAAGTAATGTTGTTGACGGTTTGATGGAGAATGACCGTTACGGGAACTTCGTGCCATCT
ATGGCAGAAGACTGGTCAGTATCTCAAGATGGTTTGACTTACACTTATACAATCCGTAAAGATGCTAAGTGGTACACTTC
TGAAGGTGAAGAGTATGCACCTGTGAAAGCTCAAGACTTTGTAACAGGTCTTAAATATGCAGCTGATAATAAGTCAGAGG
CCCTTTATCTTGTTCAAGAATCCATTAAAGGTCTTGACGCTTATGTCAAAGGTGAAGTAAAAGACTTCTCAGAAGTTGGA
ATCAAGGCAATTGATGATCAAACTGTTCAATACACTTTGAATAAACCAGAAAGCTTTTGGAACTCTAAGACAACCATGGG
TATTCTTGCACCAGTCAATGAAGAATTCCTTACTTCTAAAGGAAGTGACTTTGCCAAAGCAACTGATCCAAGCAGTATTC
TTTACAACGGTCCTTTCTTGTTGAAATCATTGGTAGCAAAATCTTCAGTAGAATTTGAAAAGAATCCAAACTACTGGGAT
AAGGACAATGTTCATATTGATAAAGTAAAACTATCATTCTGGGATGGTCAAGATACAGGCAAACTTGCAGACACCTTTAA
GGATGGCGGCTTCTCAATGGCTCGTCTCTTCCCGACAAGTGCAGGATATCCTGAACTTGAAAAAGAGTTTAAGGATAACA
TCGTTTATACACCACAAGATTCTGCTACTTTCTTAGTTGGAACAAATATTGACCGTCAGTCTTACAAGTACACTTCTAAG
ACTACAGATGAGCAAAAGACATCAACTAAGAAAGCTCTCCTAAACAAAGACTTCCGTCAAGCTATCGCCTTTGGTTTTGA
TAGAACAGCTTATGCTTCTCAAGTTAATGGAGAAAGCGGAGCAAGCAAACTTCTTCGTAACTTGTTCGTACCACCAACAT
TTGTTCAAGCTGATGGTAAAAACTTTGGTGACTTAGTTAAAGAAAAATTGGTCACCTATGGTGACGAGTGGAAAGATGTT
AATCTAGACGACGCTCAAGATGGTCTATACAATCCTGAAAAAGCGAAAGCAGAATTTGCTAAAGCTAAGACAGCTCTCCA
AGCAGAGGGCGTTCAATTCCCAATTCATTTGGATATGCCAGTTGACCAAACTAATACTACAAAAGTTCAACGTGTTCAGT
CATTGAAACAATCACTTGAAGCAACATTAGGAACTGACAATGTCGTTGTTGATATTCAACAACTTCAAAAAGATGAAGTC
TTAAATGTTACCTACTTTGCTGAAACAGCTGCTGGAGAAGATTGGGATCTCTCAGATAACGTTGGATGGTCTCCAGACTA
CATTGACCCATCTACTTACCTTGATATCATCAAACCATCTGTTGGTGAAAATACGAAGACTTATCTAGGATTTGATGCTG
GTACAAACAACGCTGCTGCCAAACAAGTTGGTTTGGAAGATTATGAAAAGATGGTTGTTGAAGCCGGAAACGAAAACACT
GATGTTTCAAAACGTTATGATAAATATGCTGCGGCCCAAGCTTGGTTGACAGATAGCGCTTTGATTATTCCAACAACTTC
TCAAACTGGACGTCCAATGTTGTCTAAGATGGTGCCATATACTCTTCCATTTGCATACTCAGGTAACAAGGGTATGAGTG
AAGCCCTCTTGTACAAGTACCTTGAACTTCAAGATAAACCAGTAACTGCTGATGAATATCAAAAAGCTCAAGATAAATGG
AAGAAAGAAAAAGAAGAATCTAATAAAAAAGCGCAAGAAGATCTTGCAAACCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.363

100

0.605
  amiA3 Streptococcus thermophilus LMD-9

60.061

100

0.602
  amiA3 Streptococcus thermophilus LMG 18311

59.607

100

0.597