Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   HW271_RS05905 Genome accession   NZ_CP058258
Coordinates   1202547..1204505 (-) Length   652 a.a.
NCBI ID   WP_178895240.1    Uniprot ID   A0A7H8Z8Y5
Organism   Streptococcus sp. oral taxon 061 strain F0704     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1197547..1209505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW271_RS05895 (HW271_05895) - 1200136..1201302 (-) 1167 WP_178895237.1 MalY/PatB family protein -
  HW271_RS05900 (HW271_05900) - 1201307..1202401 (-) 1095 WP_178895238.1 cystathionine gamma-synthase -
  HW271_RS05905 (HW271_05905) amiA3 1202547..1204505 (-) 1959 WP_178895240.1 peptide ABC transporter substrate-binding protein Regulator
  HW271_RS05910 (HW271_05910) - 1204695..1206317 (-) 1623 WP_178895241.1 polysaccharide biosynthesis protein -
  HW271_RS05915 (HW271_05915) - 1206423..1207868 (+) 1446 WP_178895243.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  HW271_RS05920 (HW271_05920) - 1207903..1208553 (-) 651 WP_178895245.1 DUF1803 domain-containing protein -
  HW271_RS05925 (HW271_05925) - 1208537..1209049 (-) 513 WP_178895246.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72302.30 Da        Isoelectric Point: 4.6355

>NTDB_id=463226 HW271_RS05905 WP_178895240.1 1202547..1204505(-) (amiA3) [Streptococcus sp. oral taxon 061 strain F0704]
MKKSKAKYLTLAGVALSAGLLLAACSNSASSTKTYNYVYGNDPSSLNYLLENRATTGDVVTNLVDGLMENDQYGNYIPSL
AEDWTVSKDGLTYTYKLRKDAKWYTADGEEYAPVTAQDFVTGLKYAADKNSEALYLVQDSVAGLADYVSGKTTDFSTVGV
KAIDEQTVQYTLTQPEPYWNSKTTATILFPVNADFLNSKGDDFGKVDPANILYNGPFILKSFTSKSVLEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFSEGVYSFARLYPNSSSFAGVQEKYKDNIIYSMQTATSFYFNFNLDRKSYNHTSKTT
DAEKTAQQEAVLNKSFRQAINFAYDRTAYGAQSQGEEGATKIIRNLLVPPSFVTLDGKDFGDVVASKMVNYGQVWQNVNF
ADAQDAYYNADKAKEAFAQAKKELEAKGVQFPIHLDLPVDQSYKKGVQEASSFKQSIESVLGADNVVIDIQMLTTEEMDS
IGYLANTAAQKDYDLYNGGWSPDYQDPSTYLDTLNLTNGGSLQNLGLEPGESNAKATAVGLDTYTKMLEEANAEQDLTKR
YDKYAEAQAWLVDSSLTLPNVSLGGTPGIRKTVPFSAAFSQAGNKGVESYKYVKLQDKIVTTAEYEEARQKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=463226 HW271_RS05905 WP_178895240.1 1202547..1204505(-) (amiA3) [Streptococcus sp. oral taxon 061 strain F0704]
ATGAAAAAGTCTAAGGCAAAATATCTGACGCTAGCAGGCGTTGCCCTAAGTGCCGGTCTGCTATTGGCGGCTTGTAGCAA
CTCAGCTAGTTCTACAAAGACATATAATTATGTATATGGTAATGACCCCTCAAGTCTTAACTATCTCCTAGAAAACCGTG
CAACAACAGGTGATGTTGTGACAAACTTGGTTGATGGTTTGATGGAAAATGATCAATACGGGAACTACATTCCTTCATTG
GCAGAAGATTGGACTGTTTCCAAAGATGGTTTGACTTATACTTACAAACTTCGCAAGGACGCCAAATGGTATACAGCAGA
TGGTGAAGAGTATGCACCAGTGACAGCACAAGATTTTGTGACAGGATTGAAGTATGCTGCGGATAAAAATTCAGAAGCCT
TGTATCTAGTGCAAGATTCTGTTGCTGGTCTGGCTGACTATGTTAGCGGAAAAACTACAGACTTTTCAACAGTTGGAGTA
AAAGCTATTGACGAACAGACTGTTCAATATACTTTGACTCAACCAGAACCTTATTGGAATTCAAAAACAACTGCAACTAT
TCTGTTCCCAGTAAATGCTGATTTCTTGAACTCAAAAGGGGATGATTTCGGTAAAGTGGATCCAGCAAACATCTTGTATA
ATGGTCCATTTATTCTCAAATCATTCACTTCGAAATCTGTTCTTGAATACAAGAAAAATCCAAACTATTGGGATGCAAAA
AATGTATTTGTAGATGATGTCAAGTTGACTTACTATGATGGAAGCGACCAAGATGCGCTTGTTCGTAACTTTAGCGAAGG
TGTCTATAGTTTTGCCCGTCTCTATCCAAATAGTTCAAGTTTTGCAGGTGTGCAAGAGAAATACAAGGATAATATTATCT
ACAGTATGCAAACTGCGACTTCTTTCTACTTTAACTTTAACTTAGATAGAAAATCTTATAACCACACATCAAAAACGACA
GACGCTGAAAAGACAGCTCAACAAGAAGCAGTTTTAAACAAATCATTCCGTCAAGCCATTAACTTTGCCTATGACCGTAC
AGCTTATGGAGCTCAGTCACAAGGGGAAGAGGGAGCAACAAAGATTATCAGAAACTTGCTCGTTCCACCTTCATTTGTAA
CTCTTGATGGTAAAGATTTTGGGGATGTCGTCGCTTCTAAGATGGTTAACTACGGCCAAGTATGGCAAAATGTGAACTTT
GCGGATGCACAAGATGCCTATTATAATGCTGATAAGGCCAAAGAAGCTTTTGCACAAGCCAAGAAAGAATTGGAAGCTAA
AGGCGTACAATTCCCTATTCATCTAGACTTGCCAGTAGACCAATCATATAAGAAGGGTGTCCAAGAGGCAAGTTCCTTCA
AACAATCTATCGAGTCCGTCTTGGGTGCAGATAATGTCGTCATCGATATTCAAATGCTGACTACAGAAGAAATGGATAGT
ATCGGTTACCTTGCTAACACAGCTGCCCAAAAAGATTATGACCTCTACAATGGTGGTTGGAGCCCTGACTACCAGGATCC
ATCAACTTATCTTGATACACTTAACCTTACAAATGGTGGTTCATTGCAAAACCTTGGCTTAGAACCTGGTGAAAGTAATG
CTAAAGCAACTGCGGTTGGCTTGGATACCTACACTAAGATGCTAGAAGAAGCCAATGCTGAACAAGATTTGACCAAACGT
TATGACAAATACGCTGAAGCACAAGCTTGGTTGGTGGATAGCTCTCTCACACTTCCAAACGTATCTCTTGGTGGAACACC
AGGAATCAGAAAAACAGTTCCATTCTCTGCTGCTTTCTCTCAAGCTGGTAACAAGGGTGTTGAATCATATAAATACGTTA
AGTTGCAAGATAAGATTGTCACAACGGCTGAGTATGAAGAAGCTAGACAAAAATGGCTGAAAGAAAAAGAAGAATCTAAT
AAAAAAGCCCAAGAAGAATTAGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8Z8Y5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

57.967

100

0.586
  amiA Streptococcus salivarius strain HSISS4

57.751

100

0.583
  amiA3 Streptococcus thermophilus LMD-9

57.36

100

0.58