Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   HW369_RS00780 Genome accession   NZ_CP058255
Coordinates   162580..162942 (+) Length   120 a.a.
NCBI ID   WP_136790294.1    Uniprot ID   -
Organism   Priestia megaterium strain BHS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 156212..167443 162580..162942 within 0


Gene organization within MGE regions


Location: 156212..167443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW369_RS00740 - 156212..157042 (+) 831 WP_195695685.1 M23 family metallopeptidase -
  HW369_RS00745 spoIIID 157318..157581 (+) 264 WP_013059792.1 sporulation transcriptional regulator SpoIIID -
  HW369_RS00750 - 157768..158769 (+) 1002 WP_013059791.1 rod shape-determining protein -
  HW369_RS00755 - 158884..159708 (+) 825 WP_028409694.1 flagellar hook-basal body protein -
  HW369_RS00760 - 159732..160553 (+) 822 WP_195695686.1 flagellar hook-basal body protein -
  HW369_RS00765 fabZ 160637..161071 (+) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  HW369_RS00770 - 161100..161522 (-) 423 WP_195695687.1 helix-turn-helix transcriptional regulator -
  HW369_RS00775 - 162046..162483 (-) 438 WP_014457773.1 YwpF-like family protein -
  HW369_RS00780 ssbB 162580..162942 (+) 363 WP_136790294.1 single-stranded DNA-binding protein Machinery gene
  HW369_RS00785 - 163466..164515 (-) 1050 WP_195695688.1 C40 family peptidase -
  HW369_RS00790 - 164813..167443 (-) 2631 WP_195695689.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13470.13 Da        Isoelectric Point: 6.4651

>NTDB_id=463109 HW369_RS00780 WP_136790294.1 162580..162942(+) (ssbB) [Priestia megaterium strain BHS1]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=463109 HW369_RS00780 WP_136790294.1 162580..162942(+) (ssbB) [Priestia megaterium strain BHS1]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTAGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTAGTGGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGATTCTTCTTCATTTGATTCAAATCAGCAAGAAGAATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

93.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508