Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   JNN41_RS19830 Genome accession   NZ_CP068820
Coordinates   4104188..4104847 (-) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   Q3YXL4
Organism   Escherichia coli strain RIVM_C029951     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4099188..4109847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNN41_RS19800 (JNN41_19800) - 4099304..4100251 (+) 948 WP_001305988.1 iron-siderophore ABC transporter substrate-binding protein -
  JNN41_RS19805 (JNN41_19805) - 4100248..4101135 (+) 888 WP_000614953.1 MurR/RpiR family transcriptional regulator -
  JNN41_RS19810 (JNN41_19810) ygiN 4101180..4101494 (-) 315 WP_000958598.1 putative quinol monooxygenase -
  JNN41_RS19815 (JNN41_19815) mdaB 4101525..4102106 (-) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  JNN41_RS19820 (JNN41_19820) ygiZ 4102464..4102793 (+) 330 WP_001551659.1 DUF2645 family protein -
  JNN41_RS19825 (JNN41_19825) qseC 4102842..4104191 (-) 1350 WP_001551658.1 quorum sensing histidine kinase QseC -
  JNN41_RS19830 (JNN41_19830) ciaR 4104188..4104847 (-) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  JNN41_RS19835 (JNN41_19835) ygiW 4104999..4105391 (+) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  JNN41_RS19840 (JNN41_19840) ygiV 4105444..4105926 (+) 483 WP_000183492.1 GyrI-like domain-containing protein -
  JNN41_RS19845 (JNN41_19845) ygiS 4106035..4107642 (+) 1608 WP_001551657.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24687.63 Da        Isoelectric Point: 6.9850

>NTDB_id=463075 JNN41_RS19830 WP_001221493.1 4104188..4104847(-) (ciaR) [Escherichia coli strain RIVM_C029951]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=463075 JNN41_RS19830 WP_001221493.1 4104188..4104847(-) (ciaR) [Escherichia coli strain RIVM_C029951]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTATATAGTGCGCCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGTTAGCGGAACGTGTAGAGGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAACTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACTCTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGCAGTGATTTTATTCGTACCGTTCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365