Detailed information NTG0463046

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HWU19_RS00215
• Genome accession: NZ_CP058251
• Coordinates: 38923..40053 (+)
• Length: 376 a.a.
• NCBI ID: WP_237016563.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain UBN18
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33923..45053

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU19_RS00180	panD	34392..34745 (+)	354	WP_000142243.1	aspartate 1-decarboxylase	-
HWU19_RS00185	-	34748..35041 (+)	294	WP_237016560.1	YbaB/EbfC family nucleoid-associated protein	-
HWU19_RS00190	-	35041..36036 (+)	996	WP_237017033.1	PDZ domain-containing protein	-
HWU19_RS00195	comB6	36044..37099 (+)	1056	WP_237017034.1	P-type conjugative transfer protein TrbL	Machinery gene
HWU19_RS00200	comB7	37115..37228 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HWU19_RS00205	comB8	37225..37962 (+)	738	WP_237016561.1	type IV secretion system protein	Machinery gene
HWU19_RS00210	comB9	37962..38930 (+)	969	WP_237016562.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWU19_RS00215	comB10	38923..40053 (+)	1131	WP_237016563.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU19_RS00220	-	40123..41535 (+)	1413	WP_237016564.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HWU19_RS00225	gmd	41564..42709 (+)	1146	WP_237016565.1	GDP-mannose 4,6-dehydratase	-
HWU19_RS00230	-	42702..43634 (+)	933	WP_237016566.1	GDP-L-fucose synthase family protein	-
HWU19_RS00235	-	44016..44294 (-)	279	WP_237016567.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 42012.60 Da
• Isoelectric Point: 9.8253

>NTDB_id=463046 HWU19_RS00215 WP_237016563.1 38923..40053(+) (comB10) [Helicobacter pylori strain UBN18]
MNKWIKGAIVFMGGFATITTISLIYHQKPKAPINNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPIDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVVREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=463046 HWU19_RS00215 WP_237016563.1 38923..40053(+) (comB10) [Helicobacter pylori strain UBN18]
ATGAATAAGTGGATTAAGGGGGCGATTGTTTTTATGGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCATAAATAACCAACCTAACCTTTTAAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTACCAGCCCTCCAATAGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTCTAAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AGAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGCAAGGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGTAGGATT
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACCAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAGGTGACCAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGGTTAG
AGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.277	100	0.963