Detailed information NTG0463042

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HWU19_RS00195
• Genome accession: NZ_CP058251
• Coordinates: 36044..37099 (+)
• Length: 351 a.a.
• NCBI ID: WP_237017034.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain UBN18
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31044..42099

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HWU19_RS00165	-	31466..31879 (+)	414	WP_001023008.1	universal stress protein	-
HWU19_RS00170	-	31902..32177 (+)	276	WP_237016558.1	ATP-dependent Clp protease adaptor ClpS	-
HWU19_RS00175	-	32177..34402 (+)	2226	WP_237016559.1	AAA family ATPase	-
HWU19_RS00180	panD	34392..34745 (+)	354	WP_000142243.1	aspartate 1-decarboxylase	-
HWU19_RS00185	-	34748..35041 (+)	294	WP_237016560.1	YbaB/EbfC family nucleoid-associated protein	-
HWU19_RS00190	-	35041..36036 (+)	996	WP_237017033.1	PDZ domain-containing protein	-
HWU19_RS00195	comB6	36044..37099 (+)	1056	WP_237017034.1	P-type conjugative transfer protein TrbL	Machinery gene
HWU19_RS00200	comB7	37115..37228 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HWU19_RS00205	comB8	37225..37962 (+)	738	WP_237016561.1	type IV secretion system protein	Machinery gene
HWU19_RS00210	comB9	37962..38930 (+)	969	WP_237016562.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HWU19_RS00215	comB10	38923..40053 (+)	1131	WP_237016563.1	DNA type IV secretion system protein ComB10	Machinery gene
HWU19_RS00220	-	40123..41535 (+)	1413	WP_237016564.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39785.78 Da
• Isoelectric Point: 9.0382

>NTDB_id=463042 HWU19_RS00195 WP_237017034.1 36044..37099(+) (comB6) [Helicobacter pylori strain UBN18]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSVLKEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLGNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVMACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=463042 HWU19_RS00195 WP_237017034.1 36044..37099(+) (comB6) [Helicobacter pylori strain UBN18]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAGCGTGCTAAAAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTCTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAATATGATCGCGCAAAGCCT
CTCTCAAAGCTTGGGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGATGGCATGCCTGAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTATTGCTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCACATGCAAGAAAAACAAGACTTAAGCCTTTTGTTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCACTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96