Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUW87_RS11445 Genome accession   NZ_CP058237
Coordinates   2337366..2337917 (-) Length   183 a.a.
NCBI ID   WP_010375108.1    Uniprot ID   A0A0D1LP27
Organism   Weissella cibaria strain JW15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2332366..2342917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW87_RS11405 (HUW87_11350) walK 2332441..2334318 (-) 1878 WP_063084202.1 cell wall metabolism sensor histidine kinase WalK -
  HUW87_RS11410 (HUW87_11355) yycF 2334445..2335146 (-) 702 WP_010372075.1 response regulator YycF -
  HUW87_RS11435 (HUW87_11380) - 2336356..2336838 (-) 483 WP_063083078.1 hypothetical protein -
  HUW87_RS11440 (HUW87_11385) rpsR 2337072..2337314 (-) 243 WP_003608765.1 30S ribosomal protein S18 -
  HUW87_RS11445 (HUW87_11390) ssb 2337366..2337917 (-) 552 WP_010375108.1 single-stranded DNA-binding protein Machinery gene
  HUW87_RS11450 (HUW87_11395) rpsF 2337994..2338293 (-) 300 WP_003608769.1 30S ribosomal protein S6 -
  HUW87_RS11455 (HUW87_11400) - 2338767..2341583 (+) 2817 WP_242874298.1 MucBP domain-containing protein -
  HUW87_RS11460 (HUW87_11405) - 2341645..2342589 (-) 945 WP_043708960.1 nucleoside hydrolase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19544.18 Da        Isoelectric Point: 4.6085

>NTDB_id=462894 HUW87_RS11445 WP_010375108.1 2337366..2337917(-) (ssb) [Weissella cibaria strain JW15]
MINRVVLVGRLTRDVELRYTTSGAAVGTFSLAVNRQFTNANGERETDFINAVIWRKSAENFANFTSKGSLVAVEGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESEQRRAQSGSANNNFGGGQQGGNQGGFNAAPAQNPFGAPASNGNVFGGASTP
AQSSNDPFGGGQEVDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=462894 HUW87_RS11445 WP_010375108.1 2337366..2337917(-) (ssb) [Weissella cibaria strain JW15]
ATGATTAATCGTGTTGTTCTGGTTGGTCGCTTGACACGTGACGTTGAATTACGTTACACGACTTCAGGTGCTGCTGTCGG
AACTTTCTCACTTGCTGTTAACCGTCAGTTTACTAATGCTAATGGTGAGCGTGAGACCGACTTTATTAACGCCGTTATCT
GGCGTAAGTCGGCTGAAAACTTTGCAAACTTTACCTCTAAGGGGTCATTGGTTGCGGTTGAAGGTCGTTTGCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTATATGTCACAGAAGTTGTCGTTGATAACTTCTCATTGTTGGAGAGTCGCGC
CGAAAGTGAGCAACGCCGTGCACAAAGCGGTTCAGCAAACAATAACTTCGGCGGTGGTCAACAGGGTGGCAACCAAGGCG
GCTTCAATGCCGCGCCAGCACAAAACCCATTCGGTGCACCTGCATCAAATGGTAATGTGTTTGGTGGTGCGTCAACACCT
GCACAATCATCTAATGATCCTTTCGGTGGTGGTCAAGAGGTTGATATCTCTGACGATGATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1LP27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

69.565

100

0.699
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.804

100

0.541
  ssb Glaesserella parasuis strain SC1401

35.233

100

0.372