Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HUW87_RS08780 | Genome accession | NZ_CP058237 |
| Coordinates | 1800417..1800908 (-) | Length | 163 a.a. |
| NCBI ID | WP_145461252.1 | Uniprot ID | - |
| Organism | Weissella cibaria strain JW15 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1770391..1808575 | 1800417..1800908 | within | 0 |
Gene organization within MGE regions
Location: 1770391..1808575
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUW87_RS08585 (HUW87_08535) | - | 1770391..1771410 (-) | 1020 | WP_242874186.1 | GH25 family lysozyme | - |
| HUW87_RS08590 (HUW87_08540) | - | 1771412..1771732 (-) | 321 | WP_242874187.1 | phage holin, LLH family | - |
| HUW87_RS08595 (HUW87_08545) | - | 1771719..1771949 (-) | 231 | WP_060654748.1 | hypothetical protein | - |
| HUW87_RS08600 (HUW87_08550) | - | 1771962..1772210 (-) | 249 | WP_060654746.1 | hypothetical protein | - |
| HUW87_RS08605 (HUW87_08555) | - | 1772203..1772370 (-) | 168 | WP_242874188.1 | hypothetical protein | - |
| HUW87_RS08610 (HUW87_08560) | - | 1772386..1777587 (-) | 5202 | WP_242874189.1 | phage tail protein | - |
| HUW87_RS08615 (HUW87_08565) | - | 1777597..1778493 (-) | 897 | WP_242874190.1 | phage tail protein | - |
| HUW87_RS08620 (HUW87_08570) | - | 1778503..1781637 (-) | 3135 | WP_242874191.1 | phage tail tape measure protein | - |
| HUW87_RS08625 (HUW87_08575) | - | 1781654..1781860 (-) | 207 | WP_118123272.1 | hypothetical protein | - |
| HUW87_RS08630 (HUW87_08580) | - | 1781953..1782393 (-) | 441 | WP_242874192.1 | tail assembly chaperone | - |
| HUW87_RS08635 (HUW87_08585) | - | 1782479..1783093 (-) | 615 | WP_118123274.1 | phage major tail protein, TP901-1 family | - |
| HUW87_RS08640 (HUW87_08590) | - | 1783102..1783470 (-) | 369 | WP_128735697.1 | hypothetical protein | - |
| HUW87_RS08645 (HUW87_08595) | - | 1783467..1783829 (-) | 363 | WP_242874193.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| HUW87_RS08650 (HUW87_08600) | - | 1783832..1784116 (-) | 285 | WP_242874194.1 | hypothetical protein | - |
| HUW87_RS08655 (HUW87_08605) | - | 1784116..1784457 (-) | 342 | WP_128735694.1 | phage head-tail connector protein | - |
| HUW87_RS08660 | - | 1784468..1784581 (-) | 114 | Protein_1657 | HeH/LEM domain-containing protein | - |
| HUW87_RS08665 (HUW87_08615) | - | 1784767..1785666 (-) | 900 | WP_145461244.1 | phage capsid protein | - |
| HUW87_RS08670 (HUW87_08620) | - | 1785692..1786261 (-) | 570 | WP_242874195.1 | DUF4355 domain-containing protein | - |
| HUW87_RS08675 (HUW87_08625) | - | 1786395..1786646 (-) | 252 | WP_195318005.1 | hypothetical protein | - |
| HUW87_RS08680 (HUW87_08630) | - | 1786653..1788368 (-) | 1716 | WP_242874196.1 | minor capsid protein | - |
| HUW87_RS08685 (HUW87_08635) | - | 1788355..1789902 (-) | 1548 | WP_242874197.1 | phage portal protein | - |
| HUW87_RS08690 (HUW87_08640) | - | 1789911..1791191 (-) | 1281 | WP_242874198.1 | PBSX family phage terminase large subunit | - |
| HUW87_RS08695 (HUW87_08645) | - | 1791184..1791606 (-) | 423 | WP_242874199.1 | terminase small subunit | - |
| HUW87_RS08710 (HUW87_08660) | - | 1792166..1792594 (-) | 429 | WP_341352994.1 | HNH endonuclease | - |
| HUW87_RS08715 (HUW87_08665) | - | 1792668..1792832 (-) | 165 | WP_160280047.1 | hypothetical protein | - |
| HUW87_RS08720 (HUW87_08670) | - | 1793329..1793790 (-) | 462 | WP_242874201.1 | DUF722 domain-containing protein | - |
| HUW87_RS08725 (HUW87_08675) | - | 1793917..1794489 (-) | 573 | WP_242874202.1 | RloB family protein | - |
| HUW87_RS08730 (HUW87_08680) | - | 1794494..1795774 (-) | 1281 | WP_242874203.1 | ATP-binding protein | - |
| HUW87_RS08735 (HUW87_08685) | - | 1796322..1796735 (-) | 414 | WP_145559015.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| HUW87_RS08740 (HUW87_08690) | - | 1796819..1797007 (-) | 189 | WP_242874204.1 | hypothetical protein | - |
| HUW87_RS08745 (HUW87_08695) | - | 1797011..1797337 (-) | 327 | WP_242874205.1 | hypothetical protein | - |
| HUW87_RS08750 (HUW87_08700) | - | 1797334..1797894 (-) | 561 | WP_242874206.1 | hypothetical protein | - |
| HUW87_RS08755 (HUW87_08705) | - | 1797894..1798277 (-) | 384 | WP_242874207.1 | hypothetical protein | - |
| HUW87_RS08760 (HUW87_08710) | - | 1798277..1798423 (-) | 147 | WP_167849173.1 | hypothetical protein | - |
| HUW87_RS08765 (HUW87_08715) | - | 1798486..1798854 (-) | 369 | WP_242874208.1 | hypothetical protein | - |
| HUW87_RS08770 (HUW87_08720) | - | 1798857..1799582 (-) | 726 | WP_242874209.1 | ATP-binding protein | - |
| HUW87_RS08775 (HUW87_08725) | - | 1799582..1800406 (-) | 825 | WP_145529164.1 | phage replisome organizer N-terminal domain-containing protein | - |
| HUW87_RS08780 (HUW87_08730) | ssb | 1800417..1800908 (-) | 492 | WP_145461252.1 | single-stranded DNA-binding protein | Machinery gene |
| HUW87_RS08785 (HUW87_08735) | - | 1800874..1801584 (-) | 711 | WP_164238813.1 | putative HNHc nuclease | - |
| HUW87_RS08790 (HUW87_08740) | - | 1801584..1802225 (-) | 642 | WP_043941011.1 | ERF family protein | - |
| HUW87_RS08795 (HUW87_08745) | - | 1802227..1802409 (-) | 183 | WP_118123299.1 | hypothetical protein | - |
| HUW87_RS08800 (HUW87_08750) | - | 1802402..1802545 (-) | 144 | WP_182279142.1 | hypothetical protein | - |
| HUW87_RS08805 (HUW87_08755) | - | 1802625..1803152 (-) | 528 | WP_242874210.1 | hypothetical protein | - |
| HUW87_RS08810 (HUW87_08760) | - | 1803153..1803338 (-) | 186 | WP_118123301.1 | hypothetical protein | - |
| HUW87_RS08815 (HUW87_08765) | - | 1803335..1803532 (-) | 198 | WP_063083174.1 | hypothetical protein | - |
| HUW87_RS08820 (HUW87_08770) | - | 1803535..1803768 (-) | 234 | WP_118123302.1 | hypothetical protein | - |
| HUW87_RS08825 | - | 1803771..1804178 (-) | 408 | WP_242874211.1 | ORF6C domain-containing protein | - |
| HUW87_RS08830 (HUW87_08775) | - | 1804200..1804496 (-) | 297 | WP_242874212.1 | Rha family transcriptional regulator | - |
| HUW87_RS08835 (HUW87_08780) | - | 1804496..1804696 (-) | 201 | WP_118123304.1 | XRE family transcriptional regulator | - |
| HUW87_RS08840 (HUW87_08785) | - | 1804961..1805308 (+) | 348 | WP_118123305.1 | helix-turn-helix domain-containing protein | - |
| HUW87_RS08845 (HUW87_08790) | - | 1805309..1805719 (+) | 411 | WP_118123306.1 | ImmA/IrrE family metallo-endopeptidase | - |
| HUW87_RS08850 (HUW87_08795) | bamE | 1805788..1806405 (+) | 618 | WP_242874213.1 | outer membrane protein assembly factor BamE | - |
| HUW87_RS08855 (HUW87_08800) | - | 1806576..1807667 (+) | 1092 | WP_242874214.1 | tyrosine-type recombinase/integrase | - |
| HUW87_RS08860 (HUW87_08805) | - | 1807841..1808575 (-) | 735 | WP_063083185.1 | gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18013.72 Da Isoelectric Point: 4.9371
>NTDB_id=462889 HUW87_RS08780 WP_145461252.1 1800417..1800908(-) (ssb) [Weissella cibaria strain JW15]
MNHVSLIGRLTKEPELRYTTSGAAVASGTIAVNRDFTNANGERESDFINFVIWRKAAENFVNMTAKGSQVGLEGSWQTRS
YENQQGQRVYVSELVVSNFTLVETKEQTEQRKGQSAQQGNGGFKSTPSQNNFNGQQAPQQGGFSPNDMYGKDLPPLNDDD
LPF
MNHVSLIGRLTKEPELRYTTSGAAVASGTIAVNRDFTNANGERESDFINFVIWRKAAENFVNMTAKGSQVGLEGSWQTRS
YENQQGQRVYVSELVVSNFTLVETKEQTEQRKGQSAQQGNGGFKSTPSQNNFNGQQAPQQGGFSPNDMYGKDLPPLNDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=462889 HUW87_RS08780 WP_145461252.1 1800417..1800908(-) (ssb) [Weissella cibaria strain JW15]
ATGAATCACGTCTCGCTAATCGGTCGGCTCACTAAGGAACCAGAACTTAGGTACACCACGTCAGGTGCAGCAGTTGCATC
AGGAACAATCGCAGTTAACCGAGATTTTACGAACGCTAATGGGGAGCGTGAGAGTGACTTCATCAACTTTGTAATTTGGC
GCAAGGCTGCCGAAAACTTTGTCAATATGACCGCTAAGGGGTCACAGGTTGGTTTGGAAGGTTCTTGGCAAACACGAAGC
TATGAGAACCAACAAGGACAGCGTGTATACGTTTCTGAACTAGTAGTAAGTAACTTTACTTTAGTTGAAACAAAAGAGCA
GACAGAGCAACGCAAGGGGCAATCAGCACAACAAGGTAATGGTGGGTTCAAGAGTACACCATCACAAAACAACTTCAATG
GTCAGCAAGCACCACAGCAAGGTGGTTTCTCGCCTAATGATATGTACGGTAAAGACTTACCGCCGTTGAACGATGATGAC
CTTCCATTTTAA
ATGAATCACGTCTCGCTAATCGGTCGGCTCACTAAGGAACCAGAACTTAGGTACACCACGTCAGGTGCAGCAGTTGCATC
AGGAACAATCGCAGTTAACCGAGATTTTACGAACGCTAATGGGGAGCGTGAGAGTGACTTCATCAACTTTGTAATTTGGC
GCAAGGCTGCCGAAAACTTTGTCAATATGACCGCTAAGGGGTCACAGGTTGGTTTGGAAGGTTCTTGGCAAACACGAAGC
TATGAGAACCAACAAGGACAGCGTGTATACGTTTCTGAACTAGTAGTAAGTAACTTTACTTTAGTTGAAACAAAAGAGCA
GACAGAGCAACGCAAGGGGCAATCAGCACAACAAGGTAATGGTGGGTTCAAGAGTACACCATCACAAAACAACTTCAATG
GTCAGCAAGCACCACAGCAAGGTGGTTTCTCGCCTAATGATATGTACGGTAAAGACTTACCGCCGTTGAACGATGATGAC
CTTCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.386 |
100 |
0.571 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.674 |
100 |
0.503 |
| ssb | Vibrio cholerae strain A1552 |
35.593 |
100 |
0.387 |