Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   LILO_RS08430 Genome accession   NC_020450
Coordinates   1769745..1770743 (-) Length   332 a.a.
NCBI ID   WP_003129447.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1764745..1775743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS08410 (lilo_1624) trxA 1765135..1765449 (-) 315 WP_003129442.1 thioredoxin -
  LILO_RS08415 (lilo_1625) mutS/mutS2 1765546..1767876 (-) 2331 WP_015426839.1 endonuclease MutS2 Machinery gene
  LILO_RS08420 (lilo_1626) - 1767921..1768481 (-) 561 WP_003129445.1 CvpA family protein -
  LILO_RS08425 (lilo_1627) - 1768641..1769606 (-) 966 WP_015426840.1 NAD(P)/FAD-dependent oxidoreductase -
  LILO_RS08430 (lilo_1628) ccpA 1769745..1770743 (-) 999 WP_003129447.1 catabolite control protein A Regulator
  LILO_RS08435 (lilo_1629) - 1770958..1772046 (+) 1089 WP_042230537.1 M24 family metallopeptidase -
  LILO_RS08440 (lilo_1630) - 1772483..1774486 (-) 2004 WP_015426842.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36602.71 Da        Isoelectric Point: 4.9196

>NTDB_id=46102 LILO_RS08430 WP_003129447.1 1769745..1770743(-) (ccpA) [Lactococcus lactis subsp. lactis IO-1]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=46102 LILO_RS08430 WP_003129447.1 1769745..1770743(-) (ccpA) [Lactococcus lactis subsp. lactis IO-1]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGGGTCGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGATGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTTGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGCGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGAACGCATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTGACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  ccpA Streptococcus pneumoniae D39

57.402

99.699

0.572
  ccpA Streptococcus gordonii str. Challis substr. CH1

57.1

99.699

0.569

Multiple sequence alignment