Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   JM964_RS00345 Genome accession   NZ_CP068708
Coordinates   61086..61676 (+) Length   196 a.a.
NCBI ID   WP_024403269.1    Uniprot ID   -
Organism   Streptococcus suis strain ID33329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56086..66676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM964_RS00335 (JM964_00335) - 57469..58992 (+) 1524 WP_044763875.1 quinol oxidase -
  JM964_RS00340 (JM964_00340) hexB 59110..61047 (+) 1938 WP_172060540.1 DNA mismatch repair endonuclease MutL Machinery gene
  JM964_RS00345 (JM964_00345) ruvA 61086..61676 (+) 591 WP_024403269.1 Holliday junction branch migration protein RuvA Machinery gene
  JM964_RS00350 (JM964_00350) - 61930..62499 (+) 570 WP_202847584.1 DNA-3-methyladenine glycosylase I -
  JM964_RS00355 (JM964_00355) cinA 62536..63717 (+) 1182 WP_044681379.1 competence/damage-inducible protein A Machinery gene
  JM964_RS00360 (JM964_00360) recA 63769..64920 (+) 1152 WP_044679554.1 recombinase RecA Machinery gene
  JM964_RS00365 (JM964_00365) spx 65156..65554 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  JM964_RS00370 (JM964_00370) - 65654..65920 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  JM964_RS00375 (JM964_00375) ruvX 65920..66339 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  JM964_RS00380 (JM964_00380) - 66351..66671 (+) 321 WP_044679552.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21748.11 Da        Isoelectric Point: 5.3356

>NTDB_id=460841 JM964_RS00345 WP_024403269.1 61086..61676(+) (ruvA) [Streptococcus suis strain ID33329]
MYDYIKGILTKITAKYIVVETHGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=460841 JM964_RS00345 WP_024403269.1 61086..61676(+) (ruvA) [Streptococcus suis strain ID33329]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCATGGAGTAGGCTATAT
CTTGCAAGTTGCTAACCCCTACGCCTACTCTGGACAAGTCCAGCAAGAAGTGACGGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCCATTGAGCAGAAGAACATTAC
CTACCTGACCAAGTTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTCGAAGAAGCCATGGAAGCCATGGAA
GCTCTTGGCTACCGACCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408