Detailed information NTG0046069

Bioinformatically predicted

Overview

• Name: pilT
• Type: Machinery gene
• Locus tag: DEVAL_RS05870
• Genome accession: NC_017310
• Coordinates: 1353541..1354650 (-)
• Length: 369 a.a.
• NCBI ID: WP_010938558.1
• Uniprot ID: -
• Organism: Nitratidesulfovibrio vulgaris RCH1
• Function: mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1348541..1359650

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DEVAL_RS05860 (Deval_1160)	-	1350175..1351458 (+)	1284	WP_010938556.1	OmpP1/FadL family transporter	-
DEVAL_RS05865 (Deval_1161)	-	1351772..1353430 (-)	1659	WP_014524335.1	AAA family ATPase	-
DEVAL_RS05870 (Deval_1162)	pilT	1353541..1354650 (-)	1110	WP_010938558.1	type IV pilus twitching motility protein PilT	Machinery gene
DEVAL_RS05875 (Deval_1163)	-	1354826..1355629 (+)	804	WP_010938559.1	A24 family peptidase	-
DEVAL_RS05880 (Deval_1164)	-	1355937..1356698 (-)	762	WP_010938560.1	lytic transglycosylase domain-containing protein	-
DEVAL_RS05885 (Deval_1165)	-	1356709..1357458 (+)	750	WP_010938561.1	DUF4124 domain-containing protein	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 40926.97 Da
• Isoelectric Point: 6.2702

>NTDB_id=46069 DEVAL_RS05870 WP_010938558.1 1353541..1354650(-) (pilT) [Nitratidesulfovibrio vulgaris RCH1]
MPAIDRFFEILHQRHGSDLHLSVGCVPMLRVHGRLERLDHPPLTDDMMRALLHEITPPAKLALFEECGDVDFSHAVPGIA
RYRANLFRQERGVGAAFREIPQHILSVDELGLPPLLQELAMLPKGLVLLTGPTGSGKSTTLAAMIDYANSHRRDHIITIE
DPIEFVHTPRGCLINQREVGRDTRSFAAALRGALREDPDIILVGEMRDLETITLALEAAETGHLVLSTVHTISAAKTIDR
IVEVFPSDTQAQIRTSLSETLQAVISQVLLRRTDKPGRVAALEIMLGVPAVRNLIRESKTFQIPSFLQTSKAQGMQTLDD
DIMRLLSQGVISARDAATHAMDKQRFAAFAQRETATQQRPLSLQDDDDY

Nucleotide

• Length: 1110 bp

>NTDB_id=46069 DEVAL_RS05870 WP_010938558.1 1353541..1354650(-) (pilT) [Nitratidesulfovibrio vulgaris RCH1]
ATGCCCGCCATCGACAGGTTCTTCGAAATACTGCATCAGCGTCACGGGTCCGACCTGCACCTCTCGGTGGGGTGCGTTCC
CATGTTGCGGGTACATGGCAGGCTTGAAAGGCTCGACCACCCGCCCCTCACAGACGACATGATGCGCGCCCTGCTGCACG
AAATCACACCGCCCGCGAAACTGGCACTCTTCGAAGAATGCGGCGATGTGGACTTCAGCCATGCCGTCCCCGGCATCGCC
CGCTACCGCGCCAACCTCTTCCGGCAGGAACGCGGCGTTGGCGCGGCCTTTCGCGAAATTCCGCAGCACATCCTCTCAGT
CGATGAACTTGGGCTGCCACCGCTGCTTCAGGAACTCGCCATGCTCCCCAAGGGGCTTGTCCTGCTCACGGGGCCGACCG
GCAGCGGCAAGTCGACGACGCTTGCGGCGATGATCGACTACGCCAACAGCCACCGCCGCGACCATATCATCACTATCGAA
GACCCTATCGAATTCGTGCACACGCCACGCGGCTGCCTCATCAACCAGCGAGAAGTGGGGCGCGACACGCGCAGCTTCGC
TGCCGCCCTCCGCGGTGCGTTACGCGAAGACCCCGACATCATCCTCGTTGGCGAAATGCGCGACCTCGAAACCATCACGC
TCGCGCTTGAAGCCGCAGAGACCGGGCATCTCGTGCTCTCGACCGTGCACACCATCTCGGCCGCGAAGACCATCGACCGC
ATCGTGGAGGTCTTTCCCTCCGACACGCAGGCGCAGATACGGACAAGCCTCTCCGAGACGCTTCAGGCGGTCATCTCACA
GGTGCTCTTGCGACGCACCGACAAACCGGGACGTGTGGCGGCACTGGAAATCATGCTGGGTGTTCCCGCCGTGCGCAACC
TTATCCGCGAGAGCAAGACCTTCCAGATTCCGAGTTTCCTCCAGACGAGCAAGGCACAAGGGATGCAGACCCTCGACGAC
GACATCATGCGCCTTCTGTCACAGGGGGTCATCAGCGCGCGCGATGCCGCGACCCATGCCATGGACAAGCAGCGGTTCGC
CGCTTTTGCTCAGCGTGAGACGGCAACCCAGCAACGTCCATTGAGCCTACAGGATGACGACGACTACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (116-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilT	Acinetobacter baylyi ADP1	56.886	90.515	0.515
pilT	Pseudomonas aeruginosa PAK	56.287	90.515	0.509
pilT	Acinetobacter nosocomialis M2	56.667	89.431	0.507
pilT	Pseudomonas stutzeri DSM 10701	55.988	90.515	0.507
pilT	Acinetobacter baumannii strain A118	56.364	89.431	0.504
pilT	Acinetobacter baumannii D1279779	56.364	89.431	0.504
pilT	Legionella pneumophila strain ERS1305867	54.79	90.515	0.496
pilT	Legionella pneumophila strain Lp02	54.79	90.515	0.496
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	53.916	89.973	0.485
pilT	Vibrio cholerae strain A1552	53.916	89.973	0.485
pilT	Neisseria meningitidis 8013	52.537	90.786	0.477
pilT	Neisseria gonorrhoeae MS11	52.239	90.786	0.474
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	48.538	92.683	0.45
pilU	Acinetobacter baylyi ADP1	40.299	90.786	0.366