Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   LILO_RS01920 Genome accession   NC_020450
Coordinates   388997..389779 (+) Length   260 a.a.
NCBI ID   WP_015425849.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 383997..394779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS01895 (lilo_0358) vicX 384021..384833 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LILO_RS01900 (lilo_0359) vicK 385003..386445 (-) 1443 WP_015425846.1 sensor histidine kinase Regulator
  LILO_RS01905 (lilo_0360) yycF 386438..387139 (-) 702 WP_003131580.1 response regulator YycF -
  LILO_RS01910 (lilo_0361) tmk 387317..387952 (+) 636 WP_015425847.1 dTMP kinase -
  LILO_RS01915 (lilo_0362) - 388085..388945 (+) 861 WP_015425848.1 DNA polymerase III subunit delta' -
  LILO_RS01920 (lilo_0363) yaaT 388997..389779 (+) 783 WP_015425849.1 stage 0 sporulation family protein Regulator
  LILO_RS01925 (lilo_0364) yabA 389772..390098 (+) 327 WP_015425850.1 DNA replication initiation control protein YabA -
  LILO_RS01930 (lilo_0365) rsmI 390098..390973 (+) 876 WP_015425851.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LILO_RS01935 (lilo_0366) - 391050..391241 (-) 192 WP_003131566.1 hypothetical protein -
  LILO_RS01940 (lilo_0367) mvk 391304..392236 (-) 933 WP_003131564.1 mevalonate kinase -
  LILO_RS01945 (lilo_0368) mvaD 392542..393498 (+) 957 WP_015425852.1 diphosphomevalonate decarboxylase -
  LILO_RS01950 (lilo_0369) - 393485..394474 (+) 990 WP_015425853.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29838.32 Da        Isoelectric Point: 6.2493

>NTDB_id=46069 LILO_RS01920 WP_015425849.1 388997..389779(+) (yaaT) [Lactococcus lactis subsp. lactis IO-1]
MIYEIKFAHGESNVFAISDIELPPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRHLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=46069 LILO_RS01920 WP_015425849.1 388997..389779(+) (yaaT) [Lactococcus lactis subsp. lactis IO-1]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTCCTCCACAAACAGA
AGTTATCCTTCGATCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATAGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCACCTTGTCATTGAACAAGGTTTAGAAATGAAAATTATTGATGTTGCTTATAATTTTGACCAAATGCA
ACTTTTTATTTCGTTTACGGCAGAGAATCGTGTTGATTTTCGATTACTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCGAAAATTCATGGTGGACTTGGACCTTGTGGGCGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTAAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACTTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTGAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388

Multiple sequence alignment