Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LILO_RS01895 Genome accession   NC_020450
Coordinates   384021..384833 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis subsp. lactis IO-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 379021..389833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LILO_RS01870 (lilo_0353) ytpR 379249..379875 (+) 627 WP_015425841.1 YtpR family tRNA-binding protein -
  LILO_RS01875 (lilo_0354) nox 380037..381377 (+) 1341 WP_015425842.1 H2O-forming NADH oxidase -
  LILO_RS01880 (lilo_0355) - 381466..381855 (+) 390 WP_015425843.1 single-stranded DNA-binding protein -
  LILO_RS01885 (lilo_0356) groES 381975..382259 (+) 285 WP_003131589.1 co-chaperone GroES -
  LILO_RS01890 (lilo_0357) groL 382347..383975 (+) 1629 WP_015425845.1 chaperonin GroEL -
  LILO_RS01895 (lilo_0358) vicX 384021..384833 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  LILO_RS01900 (lilo_0359) vicK 385003..386445 (-) 1443 WP_015425846.1 sensor histidine kinase Regulator
  LILO_RS01905 (lilo_0360) yycF 386438..387139 (-) 702 WP_003131580.1 response regulator YycF -
  LILO_RS01910 (lilo_0361) tmk 387317..387952 (+) 636 WP_015425847.1 dTMP kinase -
  LILO_RS01915 (lilo_0362) - 388085..388945 (+) 861 WP_015425848.1 DNA polymerase III subunit delta' -
  LILO_RS01920 (lilo_0363) yaaT 388997..389779 (+) 783 WP_015425849.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=46066 LILO_RS01895 WP_003131583.1 384021..384833(-) (vicX) [Lactococcus lactis subsp. lactis IO-1]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=46066 LILO_RS01895 WP_003131583.1 384021..384833(-) (vicX) [Lactococcus lactis subsp. lactis IO-1]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GCAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACTAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685

Multiple sequence alignment