Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   HWQ22_RS09960 Genome accession   NZ_CP056784
Coordinates   2140096..2140476 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain TP1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2135096..2145476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ22_RS09930 (HWQ22_14545) tadA 2135214..2135717 (-) 504 WP_000033178.1 tRNA adenosine(34) deaminase TadA -
  HWQ22_RS09935 (HWQ22_14550) - 2135724..2136848 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  HWQ22_RS09940 (HWQ22_14555) ung 2136845..2137558 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  HWQ22_RS09945 (HWQ22_14560) - 2137609..2138205 (-) 597 WP_000908452.1 6-pyruvoyl trahydropterin synthase family protein -
  HWQ22_RS09950 (HWQ22_14565) gspK 2138436..2139395 (-) 960 WP_000301476.1 type II secretion system minor pseudopilin GspK -
  HWQ22_RS09955 (HWQ22_14570) xcpW 2139395..2140096 (-) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HWQ22_RS09960 (HWQ22_14575) xcpV 2140096..2140476 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  HWQ22_RS09965 (HWQ22_14580) - 2140466..2141020 (-) 555 WP_000841373.1 type II secretion system protein -
  HWQ22_RS09970 (HWQ22_14585) - 2141030..2141638 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  HWQ22_RS09975 (HWQ22_14590) - 2141676..2142449 (-) 774 WP_000497298.1 TatD family hydrolase -
  HWQ22_RS09980 (HWQ22_14595) - 2142467..2142808 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  HWQ22_RS09985 (HWQ22_14600) - 2142820..2143800 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  HWQ22_RS09990 (HWQ22_14605) kdsB 2143812..2144573 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=460646 HWQ22_RS09960 WP_000836911.1 2140096..2140476(-) (xcpV) [Acinetobacter baumannii strain TP1]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=460646 HWQ22_RS09960 WP_000836911.1 2140096..2140476(-) (xcpV) [Acinetobacter baumannii strain TP1]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1