Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   JMJ70_RS06130 Genome accession   NZ_CP068565
Coordinates   1180548..1182521 (+) Length   657 a.a.
NCBI ID   WP_131235528.1    Uniprot ID   -
Organism   Campylobacter coli strain CC19DZ036     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1175548..1187521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ70_RS06100 (JMJ70_06100) flgH 1175736..1176434 (+) 699 WP_002823649.1 flagellar basal body L-ring protein FlgH -
  JMJ70_RS06105 (JMJ70_06105) ispG 1176518..1177591 (-) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  JMJ70_RS06110 (JMJ70_06110) - 1177651..1179489 (-) 1839 WP_002838282.1 primosomal protein N' -
  JMJ70_RS06115 (JMJ70_06115) Cj0683 1179486..1179932 (-) 447 WP_052786221.1 type II secretion system protein Machinery gene
  JMJ70_RS06120 (JMJ70_06120) - 1179929..1180174 (-) 246 WP_002776428.1 hypothetical protein -
  JMJ70_RS06125 (JMJ70_06125) - 1180164..1180394 (-) 231 WP_002776426.1 hypothetical protein -
  JMJ70_RS06130 (JMJ70_06130) uvrB 1180548..1182521 (+) 1974 WP_131235528.1 excinuclease ABC subunit UvrB Machinery gene
  JMJ70_RS06135 (JMJ70_06135) - 1182556..1183980 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -
  JMJ70_RS06140 (JMJ70_06140) - 1184168..1185418 (-) 1251 WP_002781614.1 RNA polymerase factor sigma-54 -
  JMJ70_RS06145 (JMJ70_06145) lptB 1185418..1186146 (-) 729 WP_002776419.1 LPS export ABC transporter ATP-binding protein -
  JMJ70_RS06150 (JMJ70_06150) tsaE 1186139..1186546 (-) 408 WP_002776418.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  JMJ70_RS06155 (JMJ70_06155) - 1186543..1186788 (-) 246 WP_002776417.1 RNA-binding S4 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 76033.58 Da        Isoelectric Point: 6.5276

>NTDB_id=459747 JMJ70_RS06130 WP_131235528.1 1180548..1182521(+) (uvrB) [Campylobacter coli strain CC19DZ036]
MLELTSDFKPSPDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
DMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKIELNERLAQFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKDCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKIEKMPANERAKIVKELRKQMLEAAKALE
FEKAATLRDEINKLKDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=459747 JMJ70_RS06130 WP_131235528.1 1180548..1182521(+) (uvrB) [Campylobacter coli strain CC19DZ036]
ATGTTAGAACTTACAAGCGATTTTAAACCAAGTCCTGATCAAGAACAAGCAATACAAGGTATTGTCAAAAGCATAAAAAA
AGGTAATAAATATCAAACCCTACTCGGCGTAACAGGAAGCGGAAAGACTTTTACCATGGCAAATGTCATAAAAGAACTCA
ATATGCCAACCCTTATCATGAGTCATAACAAAAGCCTTTGCGCCCAGCTTTATAGCGAATTTAAAGGTTTTTTTTCTAAG
AACCATGTGGAATATTTTATTTCTTATTATGATTATTATCAGCCTGAAGCTTATATACCGCGCACCGATGTTTTTATAGA
AAAAGATAGCTCCACAAATGAGGATCTAGAACGCTTAAGACTTAGCGCAACTGCTTCGCTTTTAAGCTATGAGGATGTGG
TTTGTATCGCTAGTGTCTCGGCTAATTATGGACTTGGAAATCCAAATGAATACATAGGAATGGTTTTAATCTTTGAACTA
GACATGCAAATTTCACAAAAAGAACTTTTAAAGAAACTTGTAGACATGGGTTATAAAAGAAATGATAATTTCTTTGATCG
TGCTGATTTTCGCGTACAAGGTGATATTATAGATATTTATCCTGCTTATTACGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGTGATGAACTGGATGCAATGTATCATTATAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTCATACTT
TATCCTACAAGTCAATTTAGTGTAGGAGAAACTAGATTAAAGCAAGCTATTAAAGATATAAAGATAGAACTTAATGAGCG
TTTGGCGCAATTTGAACATGAAAACAAGCTTGTAGAATACCAACGCCTTAAACAACGCGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGCGTTGAAAACTATGCTAGACATTTAACAGGGCTTAAAGAAGGCGATACGCCTTAT
ACACTTTTTGATTATTTTGCGATTAAAAATAGGAAATTTCTTGTTATAGTCGATGAAAGCCATGTTTCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTAGATTATGGTTTTCGTCTTCCATCAGCTCTTGATA
ATCGTCCTTTAATGTTTGATGAATTTATCCATAAAGATTGTCAGTTTCTTTTTGTTTCAGCCACCCCTGCCCCGCTTGAG
CTTGAACTTAGCAAGGAAAATATCTTTCATCAAATTATGCGTCCAACAGGATTACTTGATCCTTTGATAGAACTTAAAGA
TAGCGATAATCAAGTTGAAATTTTATTTGATGAAGCCAAAAAAGTTATACAAAGAAACGAACGCGTTTTAGTTACTGTGT
TGACTAAAAAACTAGCTGAAGAGCTTACAAGGTATTATTTAGAACTTGGTATTAAAGTAAAATACATGCATTCAGATATT
GATGCAATAGAACGCAATGAAATCATAAGAGGCTTAAGAAGCGGTGCTTTTGATATGTTAATAGGTATAAATTTACTTAG
AGAAGGACTTGATTTACCTGAGGTTTCGCTTATTGCCATTATGGACGCAGATAAGGAGGGTTTTTTAAGAAGCACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAAATCACAAAATCC
ATGCAAGAAGCTATGGATACCACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACGCCAAC
TTCAGTCAAGCGACACATCGAAGAGAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAAATTG
AAAAAATGCCTGCTAATGAAAGAGCTAAAATCGTAAAAGAGCTTCGTAAACAAATGCTTGAAGCTGCTAAAGCGCTCGAA
TTTGAAAAAGCAGCGACTTTAAGAGATGAGATCAATAAATTAAAAGATTTATAG

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-246)

UvrB/uvrC motif (UVR)

(623-656)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

Ultra-violet resistance protein B (UvrB)

(552-593)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae D39

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.305

99.848

0.502