Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6I43_RS05700 Genome accession   NZ_CP068143
Coordinates   1106100..1106702 (+) Length   200 a.a.
NCBI ID   WP_000271551.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_1086     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1101100..1111702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I43_RS05665 (I6I43_05665) mreC 1101311..1102153 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  I6I43_RS05670 (I6I43_05670) mreD 1102153..1102683 (+) 531 WP_045177814.1 rod shape-determining protein MreD -
  I6I43_RS05675 (I6I43_05675) rplU 1103045..1103353 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  I6I43_RS05680 (I6I43_05680) - 1103359..1103679 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  I6I43_RS05685 (I6I43_05685) rpmA 1103691..1103975 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  I6I43_RS05690 (I6I43_05690) obgE 1104326..1105618 (+) 1293 WP_000496100.1 GTPase ObgE -
  I6I43_RS05695 (I6I43_05695) - 1105631..1106086 (+) 456 WP_000368902.1 ACT domain-containing protein -
  I6I43_RS05700 (I6I43_05700) ruvA 1106100..1106702 (+) 603 WP_000271551.1 Holliday junction branch migration protein RuvA Machinery gene
  I6I43_RS05705 (I6I43_05705) ruvB 1106734..1107738 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  I6I43_RS05710 (I6I43_05710) queA 1107740..1108765 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  I6I43_RS05715 (I6I43_05715) tgt 1108788..1109927 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  I6I43_RS05720 (I6I43_05720) yajC 1109946..1110206 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22253.45 Da        Isoelectric Point: 5.7132

>NTDB_id=458932 I6I43_RS05700 WP_000271551.1 1106100..1106702(+) (ruvA) [Staphylococcus aureus strain FDAARGOS_1086]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=458932 I6I43_RS05700 WP_000271551.1 1106100..1106702(+) (ruvA) [Staphylococcus aureus strain FDAARGOS_1086]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.734

99.5

0.465
  ruvA Streptococcus pneumoniae R6

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae D39

46.231

99.5

0.46
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425