Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6I87_RS09350 Genome accession   NZ_CP068109
Coordinates   2070865..2071536 (-) Length   223 a.a.
NCBI ID   WP_201664706.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2065865..2076536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS09335 (I6I87_09335) - 2067452..2068465 (-) 1014 WP_227715508.1 type II secretion system protein N -
  I6I87_RS09340 (I6I87_09340) gspN 2068488..2069312 (-) 825 WP_201664701.1 type II secretion system protein N -
  I6I87_RS09345 (I6I87_09345) - 2069696..2070736 (+) 1041 WP_201664704.1 NADP(H)-dependent aldo-keto reductase -
  I6I87_RS09350 (I6I87_09350) ssb 2070865..2071536 (-) 672 WP_201664706.1 single-stranded DNA-binding protein Machinery gene
  I6I87_RS09355 (I6I87_09355) - 2071674..2073038 (-) 1365 WP_201664709.1 MFS transporter -
  I6I87_RS09360 (I6I87_09360) - 2073234..2074223 (-) 990 WP_201664711.1 hypothetical protein -
  I6I87_RS09365 (I6I87_09365) - 2074432..2075256 (+) 825 WP_201664713.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23943.05 Da        Isoelectric Point: 7.1984

>NTDB_id=458899 I6I87_RS09350 WP_201664706.1 2070865..2071536(-) (ssb) [Moraxella osloensis strain FDAARGOS_1130]
MRGVNKVIIVGNLGSDPEVKQFANGGSVTRIAVATSEQWNDKQTGERREQTEWHRISLFNKLGEIAAQYLRKGSQVYIEG
SLRTSKYTDQNGVERYATEIRAEQMQMLGTAGGAQGGIANNNTAGTTYQNQPQGGYNQVGYNQGGNQAPNHFGGYPNQNN
AQTNNQAAPQAGQNAGFGNNPFMNGNQAPQGVNTGNNQPAQNPQQNPAMAMPKPGAVDDDIPF

Nucleotide


Download         Length: 672 bp        

>NTDB_id=458899 I6I87_RS09350 WP_201664706.1 2070865..2071536(-) (ssb) [Moraxella osloensis strain FDAARGOS_1130]
ATGCGCGGCGTAAATAAAGTAATCATTGTAGGCAACCTTGGTTCAGATCCTGAAGTCAAACAATTTGCCAATGGCGGTAG
CGTGACGCGTATCGCCGTGGCGACAAGTGAGCAATGGAACGACAAGCAAACAGGTGAGCGCCGTGAGCAAACCGAATGGC
ACCGTATTTCATTGTTTAATAAACTCGGTGAAATTGCAGCGCAATACCTGCGTAAAGGTAGCCAAGTCTATATCGAAGGT
AGCCTTCGCACCAGTAAATACACCGACCAAAATGGCGTAGAGCGTTATGCCACAGAGATTCGTGCCGAACAAATGCAAAT
GCTTGGCACAGCAGGCGGCGCTCAAGGCGGTATTGCTAATAACAACACTGCCGGCACAACCTACCAAAACCAGCCCCAAG
GTGGTTATAATCAAGTTGGCTACAACCAAGGTGGCAATCAAGCGCCCAATCATTTTGGCGGCTATCCAAACCAAAATAAT
GCCCAAACTAATAACCAAGCTGCGCCGCAAGCGGGTCAAAATGCAGGATTTGGCAATAACCCATTTATGAATGGCAACCA
AGCGCCACAAGGGGTAAATACAGGAAATAATCAGCCTGCCCAAAATCCCCAACAAAACCCAGCCATGGCAATGCCAAAAC
CAGGCGCAGTTGATGATGATATCCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.333

100

0.457
  ssb Neisseria gonorrhoeae MS11

37.727

98.655

0.372
  ssb Neisseria meningitidis MC58

36.818

98.655

0.363