Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO/pilO   Type   Machinery gene
Locus tag   I6I87_RS08770 Genome accession   NZ_CP068109
Coordinates   1941076..1941834 (-) Length   252 a.a.
NCBI ID   WP_198510467.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1936076..1946834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS08750 (I6I87_08750) aroB 1936380..1937477 (-) 1098 WP_201664567.1 3-dehydroquinate synthase -
  I6I87_RS08755 (I6I87_08755) - 1937546..1938082 (-) 537 WP_160002372.1 shikimate kinase -
  I6I87_RS08760 (I6I87_08760) comQ/pilQ 1938190..1940526 (-) 2337 WP_201664568.1 type IV pilus secretin family protein Machinery gene
  I6I87_RS08765 (I6I87_08765) pilP 1940544..1941086 (-) 543 WP_201664569.1 pilus assembly protein PilP Machinery gene
  I6I87_RS08770 (I6I87_08770) comO/pilO 1941076..1941834 (-) 759 WP_198510467.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I87_RS08775 (I6I87_08775) pilN 1941837..1942508 (-) 672 WP_201664571.1 PilN domain-containing protein Machinery gene
  I6I87_RS08780 (I6I87_08780) pilM 1942508..1943560 (-) 1053 WP_201664573.1 pilus assembly protein PilM Machinery gene
  I6I87_RS08785 (I6I87_08785) - 1943762..1946488 (+) 2727 WP_201664575.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28616.81 Da        Isoelectric Point: 9.4260

>NTDB_id=458896 I6I87_RS08770 WP_198510467.1 1941076..1941834(-) (comO/pilO) [Moraxella osloensis strain FDAARGOS_1130]
MKLTNPLKRPKLVKKPVHITAKKSFDVKAFTESFKSLDQNNYGSWPVPVKVTVLLFMVAVIAFLTWFLPISTKRDEIAAA
EAEQQTLLDEYRQKESKARHLKEYQAQVSKMQSDFKELLNQLPKDTRISDLVDGINMVGVGSNIKFQDIKVEPEVSQEFF
IEQPIRIAALGDYHQFGSFISGLAKLPRIITLHDFEVTNPSPSLDKLPETNLVLNVKTYRSKELNEEELKKAQKDNQKNS
AGPDNKEANNGN

Nucleotide


Download         Length: 759 bp        

>NTDB_id=458896 I6I87_RS08770 WP_198510467.1 1941076..1941834(-) (comO/pilO) [Moraxella osloensis strain FDAARGOS_1130]
GTGAAATTAACCAATCCGCTAAAAAGACCGAAACTCGTCAAAAAACCCGTTCACATTACCGCAAAAAAATCGTTTGATGT
TAAAGCCTTTACCGAAAGCTTTAAATCCCTAGACCAAAATAATTATGGTAGCTGGCCTGTGCCTGTTAAGGTTACCGTAT
TGCTATTTATGGTTGCTGTTATCGCCTTTTTAACTTGGTTTCTACCTATTAGTACCAAACGTGATGAGATTGCCGCTGCC
GAAGCCGAGCAGCAAACCTTGTTAGATGAATATCGCCAAAAAGAATCCAAAGCACGTCATCTAAAAGAATATCAAGCGCA
AGTATCAAAAATGCAGTCTGATTTTAAAGAACTGCTCAATCAATTACCCAAAGACACCCGTATTTCTGACTTGGTGGATG
GCATTAATATGGTTGGTGTGGGCAGTAACATTAAATTTCAGGATATCAAAGTTGAACCTGAAGTGTCCCAAGAGTTCTTT
ATTGAGCAGCCAATTCGTATTGCCGCTTTAGGAGATTATCACCAATTTGGCTCATTCATTAGTGGTCTAGCTAAACTACC
TCGGATTATTACCCTGCATGACTTTGAGGTCACCAACCCTAGTCCTAGCCTAGACAAGCTACCAGAAACCAATCTTGTTT
TGAACGTTAAAACTTATCGTTCAAAAGAGCTAAATGAAGAAGAATTAAAGAAGGCACAAAAAGATAATCAAAAAAATTCA
GCGGGACCTGACAATAAGGAAGCGAATAATGGCAATTAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(78-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO/pilO Acinetobacter baylyi ADP1

45.175

90.476

0.409
  pilO Acinetobacter baumannii D1279779

48.02

80.159

0.385