Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6I87_RS08775 Genome accession   NZ_CP068109
Coordinates   1941837..1942508 (-) Length   223 a.a.
NCBI ID   WP_201664571.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1936837..1947508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS08755 (I6I87_08755) - 1937546..1938082 (-) 537 WP_160002372.1 shikimate kinase -
  I6I87_RS08760 (I6I87_08760) comQ/pilQ 1938190..1940526 (-) 2337 WP_201664568.1 type IV pilus secretin family protein Machinery gene
  I6I87_RS08765 (I6I87_08765) pilP 1940544..1941086 (-) 543 WP_201664569.1 pilus assembly protein PilP Machinery gene
  I6I87_RS08770 (I6I87_08770) comO/pilO 1941076..1941834 (-) 759 WP_198510467.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6I87_RS08775 (I6I87_08775) pilN 1941837..1942508 (-) 672 WP_201664571.1 PilN domain-containing protein Machinery gene
  I6I87_RS08780 (I6I87_08780) pilM 1942508..1943560 (-) 1053 WP_201664573.1 pilus assembly protein PilM Machinery gene
  I6I87_RS08785 (I6I87_08785) - 1943762..1946488 (+) 2727 WP_201664575.1 penicillin-binding protein 1A -
  I6I87_RS08790 (I6I87_08790) - 1946564..1947082 (-) 519 WP_096488583.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24768.37 Da        Isoelectric Point: 9.6370

>NTDB_id=458897 I6I87_RS08775 WP_201664571.1 1941837..1942508(-) (pilN) [Moraxella osloensis strain FDAARGOS_1130]
MAKINLLPWRQELRERRNREFMTLVVAVLLLSLLGAFAAWSYYKNTLENQQLANERIKQENANLDKALKEIETLEQQRDD
IIARMKVIQDLQGRRPVPVRIWEDIARIIPAQMYLTSMKREADTITFTGQADNPNVISTFMRSLDGTQWLEKSAVVSIQQ
PNAVAYQAPTPAPAAGNISASSTSATLPEANYVTFVVTTMVKQTQVASATAASGVAASASKEK

Nucleotide


Download         Length: 672 bp        

>NTDB_id=458897 I6I87_RS08775 WP_201664571.1 1941837..1942508(-) (pilN) [Moraxella osloensis strain FDAARGOS_1130]
ATGGCAAAGATTAACTTACTTCCTTGGCGTCAAGAACTTCGTGAACGTAGAAACCGTGAGTTTATGACTTTAGTGGTTGC
GGTATTATTATTATCACTACTTGGTGCCTTTGCGGCATGGAGTTACTATAAAAACACCCTAGAAAACCAGCAGCTTGCTA
ATGAACGCATCAAACAAGAAAACGCTAATTTAGACAAGGCGTTAAAAGAAATCGAAACCCTTGAGCAGCAGCGTGATGAT
ATCATCGCGCGTATGAAAGTGATTCAAGACTTGCAAGGCCGTCGCCCTGTCCCTGTCCGTATTTGGGAAGATATTGCCAG
AATTATCCCCGCACAAATGTATTTAACCAGTATGAAGCGTGAAGCTGATACCATCACCTTTACCGGTCAAGCCGACAACC
CGAATGTGATTTCAACATTTATGCGCAGTCTTGATGGGACGCAGTGGTTAGAAAAATCGGCTGTGGTCAGTATACAGCAG
CCCAATGCGGTGGCTTATCAAGCACCCACACCCGCACCTGCTGCTGGTAACATCAGTGCTAGCAGTACCAGCGCAACATT
ACCAGAAGCCAATTACGTGACTTTTGTGGTAACAACCATGGTTAAGCAAACCCAAGTCGCCAGTGCCACCGCTGCAAGTG
GCGTTGCGGCAAGTGCGAGTAAGGAGAAATAA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(101-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

37.445

100

0.381