Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   I6I87_RS00815 Genome accession   NZ_CP068109
Coordinates   176492..176815 (-) Length   107 a.a.
NCBI ID   WP_201665279.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 171492..181815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS00800 (I6I87_00800) panB 172426..173307 (-) 882 WP_201665274.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  I6I87_RS00805 (I6I87_00805) folK 173529..174023 (-) 495 WP_201665277.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  I6I87_RS00810 (I6I87_00810) pcnB 174020..176248 (-) 2229 WP_201665278.1 polynucleotide adenylyltransferase PcnB -
  I6I87_RS00815 (I6I87_00815) comEA 176492..176815 (-) 324 WP_201665279.1 ComEA family DNA-binding protein Machinery gene
  I6I87_RS00820 (I6I87_00820) - 176853..177032 (+) 180 WP_201665280.1 hypothetical protein -
  I6I87_RS00825 (I6I87_00825) mazG 177091..177915 (-) 825 WP_201665281.1 nucleoside triphosphate pyrophosphohydrolase -
  I6I87_RS00830 (I6I87_00830) - 178242..179441 (+) 1200 WP_201665282.1 nucleotide sugar dehydrogenase -
  I6I87_RS00835 (I6I87_00835) - 179525..180979 (+) 1455 WP_201665283.1 phosphomannomutase CpsG -
  I6I87_RS00840 (I6I87_00840) - 181100..181723 (-) 624 WP_040403627.1 thiol:disulfide interchange protein DsbA/DsbL -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11332.03 Da        Isoelectric Point: 9.8379

>NTDB_id=458863 I6I87_RS00815 WP_201665279.1 176492..176815(-) (comEA) [Moraxella osloensis strain FDAARGOS_1130]
MPAQAQVCTPSLTPEQAFLAVINLTGTNGGTTKPSANLLINSPKVININTASEAELTQLDGIGAKKAQQIILYRQMMAPF
ATADDLANVKGIGKATVDKNRHRITTQ

Nucleotide


Download         Length: 324 bp        

>NTDB_id=458863 I6I87_RS00815 WP_201665279.1 176492..176815(-) (comEA) [Moraxella osloensis strain FDAARGOS_1130]
ATGCCCGCACAGGCGCAAGTATGTACCCCAAGCTTGACGCCCGAGCAGGCTTTTTTGGCCGTGATAAATTTGACTGGGAC
TAACGGTGGCACCACAAAACCCTCTGCAAATCTCCTTATCAATTCGCCCAAAGTGATTAATATCAATACCGCCAGTGAAG
CCGAGCTTACACAGCTTGATGGTATCGGCGCCAAAAAAGCCCAGCAAATTATTTTATACCGGCAAATGATGGCACCGTTT
GCCACGGCAGATGACCTAGCCAACGTCAAAGGTATCGGTAAAGCGACTGTCGATAAAAATCGCCACCGCATCACCACCCA
ATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(45-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

52.564

72.897

0.383
  comEA Vibrio cholerae strain A1552

52.564

72.897

0.383
  comEA Vibrio campbellii strain DS40M4

44.828

81.308

0.364