Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Machinery gene
Locus tag   TCCBUS3UF1_RS04275 Genome accession   NC_017278
Coordinates   851262..852929 (-) Length   555 a.a.
NCBI ID   WP_014515277.1    Uniprot ID   -
Organism   Thermus sp. CCB_US3_UF1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 846262..857929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TCCBUS3UF1_RS04255 - 847369..848742 (+) 1374 WP_155983259.1 O-antigen ligase family protein -
  TCCBUS3UF1_RS04260 (TCCBUS3UF1_8660) - 848674..850254 (-) 1581 WP_014515273.1 O-antigen ligase family protein -
  TCCBUS3UF1_RS04265 (TCCBUS3UF1_8670) - 850263..850547 (-) 285 WP_050802035.1 hypothetical protein -
  TCCBUS3UF1_RS12425 - 850566..850616 (-) 51 Protein_858 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  TCCBUS3UF1_RS04270 (TCCBUS3UF1_8680) - 850686..851045 (-) 360 WP_014515275.1 type II secretion system protein -
  TCCBUS3UF1_RS04275 (TCCBUS3UF1_8700) comZ 851262..852929 (-) 1668 WP_014515277.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  TCCBUS3UF1_RS04280 (TCCBUS3UF1_8710) pilA/pilA3 852939..853643 (-) 705 WP_014515278.1 PilW family protein Machinery gene
  TCCBUS3UF1_RS04285 (TCCBUS3UF1_8720) pilA/pilA2 853640..854248 (-) 609 WP_014515279.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  TCCBUS3UF1_RS04290 (TCCBUS3UF1_8730) - 854245..854718 (-) 474 WP_041433756.1 GspH/FimT family protein -
  TCCBUS3UF1_RS04295 (TCCBUS3UF1_8740) pilA/pilA1 854773..855243 (-) 471 WP_014515281.1 GspH/FimT family protein Machinery gene
  TCCBUS3UF1_RS04300 (TCCBUS3UF1_8750) - 855310..856500 (+) 1191 WP_014515282.1 thiolase family protein -
  TCCBUS3UF1_RS04305 - 856497..856805 (-) 309 WP_041433963.1 DUF503 domain-containing protein -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 59979.47 Da        Isoelectric Point: 7.4035

>NTDB_id=45822 TCCBUS3UF1_RS04275 WP_014515277.1 851262..852929(-) (comZ) [Thermus sp. CCB_US3_UF1]
MRSKGIALVATLALMVLIGLLVFSTFFRTQIELWVTRNDTTSVQAFYAAEAGLQKYKAVLFQQYVWREQQGQTGGGSGCF
TSLVTGLDLDRNGNLLTFVNNQITLATNEVVVDADNRPIGRYTVTLYRDANDGQLFTLVSQGTSGGAKATVQATVRLSNT
GYLEQAIFAGTGQANKWLNGGATIRGGIYIVGSPSNPNQTVIDANGNFELLNWYDLSSYSGIAARVDTAYRQANDLCASL
RVQYGKISVGGSTRLGEPSNKLKGVFVGRGGQDITGQNVDVCQNNKGVCTEAMGPFDLANPPAFPTLDARLNSEACKDYS
TWRACLQDRAALRIQRVSNTVSLAYPLSVTLNASCFNAINNSGVLTLDKSTVDCTYTRLDGSQGGFKYTYASNQGLLEIY
GDVVLEGLNVVFNQPTEYKALSGNEKNATFAVLAKNNQGGNVDLNDNLLPQTNHGLFPNHALGLVAEDDIYQRGQYVMAP
VYAGGTFRVVKDNVLFGSVISNEFCTTSAGNQTNCNAGQKAEVVYIRIPQENRPVLLPAIRGGTPVFQILSYERR

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=45822 TCCBUS3UF1_RS04275 WP_014515277.1 851262..852929(-) (comZ) [Thermus sp. CCB_US3_UF1]
ATGCGGTCTAAAGGCATTGCCCTGGTAGCCACCCTGGCCCTGATGGTGCTGATCGGCCTTTTGGTCTTCAGCACCTTCTT
CCGAACCCAGATAGAACTCTGGGTAACCCGCAACGACACCACCTCGGTCCAGGCCTTTTACGCCGCCGAAGCCGGCCTGC
AAAAGTACAAGGCCGTTCTCTTCCAGCAGTACGTATGGCGGGAACAGCAGGGCCAGACGGGAGGGGGTAGCGGCTGCTTT
ACCTCCTTGGTCACGGGCCTGGACCTGGACCGCAACGGCAACCTCCTCACCTTCGTCAACAACCAGATCACCTTGGCCAC
CAACGAGGTGGTGGTGGACGCGGACAACCGCCCCATCGGCCGCTACACCGTAACCCTCTACCGGGATGCCAACGACGGCC
AGCTCTTTACCCTGGTTTCCCAGGGCACCTCGGGCGGGGCCAAGGCCACGGTGCAGGCCACGGTCCGCCTCAGCAACACG
GGCTACCTGGAGCAGGCCATCTTTGCCGGTACCGGCCAGGCCAACAAGTGGCTGAACGGCGGGGCCACCATCCGCGGGGG
CATCTACATCGTGGGTAGCCCCAGCAACCCCAACCAGACGGTCATAGACGCCAACGGCAACTTTGAGCTGCTCAACTGGT
ACGACCTGAGCAGCTACAGCGGCATCGCCGCCCGGGTGGACACCGCCTACCGCCAAGCCAACGACCTCTGCGCCAGCCTG
CGGGTGCAGTACGGCAAGATTTCCGTGGGCGGCAGCACCCGCTTGGGGGAACCCAGCAACAAGCTCAAAGGGGTCTTTGT
GGGCCGGGGCGGCCAGGACATCACCGGGCAGAACGTGGACGTCTGCCAGAACAACAAGGGGGTCTGCACCGAGGCCATGG
GCCCCTTTGACCTGGCCAACCCCCCGGCCTTCCCCACCCTGGACGCCAGGCTCAACTCCGAAGCCTGCAAGGACTACAGC
ACCTGGCGGGCCTGCTTGCAGGACAGGGCCGCCTTGCGCATCCAGCGCGTGAGCAACACCGTGAGCCTGGCCTATCCCTT
GAGCGTCACCCTCAACGCCTCCTGCTTCAACGCCATCAACAACTCGGGGGTCCTGACCCTGGATAAGAGCACCGTGGACT
GCACCTACACCCGGCTGGACGGCTCCCAGGGCGGCTTCAAGTACACCTACGCCAGCAACCAGGGGCTTCTGGAAATCTAC
GGGGACGTGGTCCTGGAAGGCCTGAACGTGGTCTTCAACCAGCCCACGGAGTACAAAGCCCTTTCCGGAAACGAAAAGAA
CGCCACCTTCGCCGTGCTGGCCAAGAACAACCAAGGCGGCAACGTGGACCTGAACGACAACCTTCTCCCCCAGACCAACC
ACGGGCTTTTCCCCAACCACGCCCTGGGCCTGGTGGCGGAAGACGACATCTACCAAAGGGGCCAGTACGTGATGGCTCCC
GTGTATGCCGGGGGCACGTTCCGCGTGGTGAAGGATAACGTCCTCTTCGGCTCGGTCATCAGCAACGAGTTCTGCACCAC
CAGCGCAGGCAACCAGACGAACTGCAACGCCGGGCAGAAGGCCGAGGTGGTGTACATCCGCATCCCCCAGGAAAACCGCC
CCGTCCTCCTGCCCGCCATCAGGGGCGGCACCCCCGTCTTCCAAATCCTTTCCTATGAGCGGCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Thermus thermophilus HB27

73.333

100

0.733

Multiple sequence alignment