Detailed information NTG0458126

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: SA190iCDA_RS10555
• Genome accession: NZ_CP056087
• Coordinates: 2356716..2358962 (+)
• Length: 748 a.a.
• NCBI ID: WP_083329841.1
• Uniprot ID: -
• Organism: Pseudomonas argentinensis strain SA190
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2351716..2363962

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SA190iCDA_RS10525	-	2351735..2352454 (-)	720	WP_070886880.1	glycerophosphodiester phosphodiesterase	-
SA190iCDA_RS10530	-	2352464..2352760 (-)	297	WP_070886881.1	phosphodiesterase	-
SA190iCDA_RS10535	-	2352757..2353329 (-)	573	WP_070886882.1	PilZ domain-containing protein	-
SA190iCDA_RS10540	-	2353425..2354675 (+)	1251	WP_070886883.1	lipoprotein-releasing ABC transporter permease subunit	-
SA190iCDA_RS10545	lolD	2354668..2355372 (+)	705	WP_070886884.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
SA190iCDA_RS10550	-	2355372..2356616 (+)	1245	WP_070886885.1	lipoprotein-releasing ABC transporter permease subunit	-
SA190iCDA_RS10555	comA	2356716..2358962 (+)	2247	WP_083329841.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
SA190iCDA_RS10560	exbB	2359035..2359691 (+)	657	WP_070886886.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
SA190iCDA_RS10565	-	2359688..2360116 (+)	429	WP_070886887.1	ExbD/TolR family protein	-
SA190iCDA_RS10570	lpxK	2360116..2361123 (+)	1008	WP_070886888.1	tetraacyldisaccharide 4'-kinase	-
SA190iCDA_RS10575	-	2361164..2361349 (+)	186	WP_013791977.1	Trm112 family protein	-
SA190iCDA_RS10580	kdsB	2361351..2362115 (+)	765	WP_070886889.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
SA190iCDA_RS10585	-	2362115..2362579 (+)	465	WP_070886890.1	low molecular weight protein-tyrosine-phosphatase	-
SA190iCDA_RS10590	murB	2362576..2363595 (+)	1020	WP_070886891.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81436.44 Da
• Isoelectric Point: 7.8115

>NTDB_id=458126 SA190iCDA_RS10555 WP_083329841.1 2356716..2358962(+) (comA) [Pseudomonas argentinensis strain SA190]
MDGTQTGDLRSALLALAAGLLLLRFIPQLPPVSLLLACALLGLILLPFRGYRIGLLLLGFSWACLSAQGALDDRLDPELD
GRTLWLEGRVVDLPDVRDGVVRFHLAEPQSRRAELPQLLRLSWYDGPAIRAGEVWRLAVNLKRPHGLVNPQSFDYEAWLL
AQRIGGVGTIKSGQRLSEAGGGAAWRDGVRQHMLAKDPHGRAGGLAALVLGDSSGLSVADWRVLQDTGTVHLLVISGQHV
TLVAGISYGLVFWLARLGWWPRALPWLPVACLLGFASALGYSLLAGFEVPVQRACAMIGLVLLWRWRFRHLGITLPLLMA
LVAVLLLEPLAVLQPGFWLSFGAVGLLILIFAARLGVWAWWRTLGRAQWAMTLGLLPMLLALGLPISASSPLANLIAVPW
VGFAVVPLALLGTLLLPVPWLGEGLLWLAGFSLEWLFRLLGLMAAWLPAWLPSKLPLWGWLLVALGTLFILLPGGVPLRS
LGLILLLPLLFTPVERPAEQRAEVWMLDVGQGLSMLVLTRQHALLYDAGPSFGDFDLGERVVLPSLRALDVRALDMLLIS
HSDNDHSGGAEAVARGMPVKRVVSGEAPALPVGLDAEACAEENWSWDGVKFGTWRWAEATNSNSSSCVLMIEAAGERILL
TGDIDARAERALIDSGHDLQARWLVAPHHGSRSSSSWALLKAVQPQAVLYSRGKHNAYGHPHPSIVSRYAAFDARAYDSV
ETGALRIDLGSFGEPQALREIPRFWREK

Nucleotide

• Length: 2247 bp

>NTDB_id=458126 SA190iCDA_RS10555 WP_083329841.1 2356716..2358962(+) (comA) [Pseudomonas argentinensis strain SA190]
ATGGACGGGACGCAAACCGGCGACTTGCGCAGCGCATTGTTGGCACTGGCCGCCGGCCTTCTGTTGCTGCGCTTCATACC
CCAGCTGCCACCGGTCTCCCTGCTGCTGGCGTGCGCGCTGCTCGGGCTGATCCTCCTGCCGTTTCGCGGTTACCGGATCG
GCCTGTTGCTGCTCGGATTCAGCTGGGCCTGCCTGTCGGCCCAAGGGGCGCTGGATGATCGCCTGGATCCCGAACTGGAC
GGCCGCACGCTGTGGCTGGAGGGCAGGGTGGTGGACCTGCCGGATGTCCGTGACGGCGTGGTGCGCTTTCATCTGGCCGA
GCCACAGTCGCGCCGTGCCGAGCTGCCGCAGCTGCTGCGTCTGTCCTGGTACGACGGGCCAGCGATTCGCGCTGGTGAGG
TCTGGCGCCTGGCGGTGAACCTCAAGCGGCCCCACGGCCTGGTCAACCCGCAATCCTTCGATTACGAAGCCTGGCTGCTG
GCCCAGCGCATAGGCGGCGTGGGCACCATCAAGTCCGGCCAGCGCCTGAGCGAAGCGGGCGGCGGCGCGGCGTGGCGCGA
TGGCGTGCGTCAGCACATGCTCGCCAAGGATCCCCACGGCCGCGCCGGTGGGCTGGCCGCCCTGGTGCTGGGCGACAGCT
CGGGCCTGTCGGTAGCCGACTGGCGAGTGCTGCAGGACACCGGCACGGTGCACCTGCTGGTGATTTCCGGGCAGCACGTG
ACCTTGGTGGCGGGGATATCCTACGGCCTGGTGTTCTGGCTGGCCCGGCTGGGCTGGTGGCCACGCGCACTGCCCTGGCT
GCCGGTAGCCTGCCTGCTGGGCTTCGCCTCGGCGCTGGGCTACAGCCTGTTGGCCGGCTTCGAGGTGCCGGTGCAGCGGG
CCTGCGCGATGATCGGCCTGGTGCTGCTGTGGCGCTGGCGCTTTCGCCATCTGGGCATCACCTTGCCCTTGCTGATGGCA
CTGGTCGCGGTGCTGCTCCTGGAACCCCTGGCGGTGTTGCAGCCGGGCTTCTGGCTGTCGTTCGGTGCGGTAGGGCTGTT
GATTCTGATCTTCGCTGCGCGCCTGGGCGTCTGGGCCTGGTGGCGAACCCTGGGCCGTGCGCAGTGGGCGATGACCCTGG
GCCTGCTGCCGATGCTGCTGGCCCTGGGCCTGCCGATCAGCGCCAGCAGCCCCCTGGCTAACCTGATCGCCGTGCCCTGG
GTCGGTTTCGCCGTGGTGCCGCTGGCGCTGCTCGGCACCTTGCTGCTGCCGGTGCCCTGGCTCGGCGAAGGGCTGCTGTG
GCTGGCCGGCTTCTCCCTGGAGTGGCTGTTCCGCCTGCTCGGCTTGATGGCCGCCTGGCTGCCGGCCTGGTTGCCCAGCA
AGCTGCCGTTGTGGGGCTGGCTACTGGTGGCGCTGGGCACGCTGTTCATCTTGTTGCCGGGCGGTGTGCCGTTGCGCAGC
TTGGGCCTGATCCTGCTGCTGCCTTTATTGTTCACGCCGGTAGAGCGGCCGGCTGAGCAACGCGCAGAAGTGTGGATGCT
GGATGTCGGCCAGGGCCTGTCGATGTTGGTGCTGACCCGCCAGCATGCGCTGCTGTATGACGCCGGCCCGAGCTTTGGCG
ATTTCGACCTGGGCGAGCGGGTGGTGCTGCCCTCGTTGCGGGCGCTGGATGTGCGCGCCTTGGACATGCTGCTGATCAGC
CATTCGGACAACGATCATTCCGGTGGTGCCGAGGCGGTCGCGCGGGGCATGCCGGTGAAGCGCGTGGTCAGTGGCGAGGC
GCCCGCGCTACCCGTTGGGCTCGATGCAGAGGCGTGCGCGGAAGAAAACTGGTCGTGGGATGGGGTAAAGTTCGGCACCT
GGCGCTGGGCTGAGGCGACGAACAGCAACTCGTCTTCCTGCGTGTTGATGATCGAGGCGGCTGGCGAGCGCATCCTGCTG
ACCGGGGATATCGACGCACGGGCCGAGCGCGCGCTGATCGACAGCGGTCATGATCTGCAGGCCCGCTGGCTGGTGGCGCC
GCACCATGGCAGCCGCAGTTCGTCGTCCTGGGCCTTGCTCAAGGCGGTGCAGCCCCAGGCGGTGCTGTATTCGCGGGGCA
AGCACAATGCCTATGGCCATCCCCATCCGAGCATCGTCTCTCGTTACGCGGCCTTCGATGCCCGTGCCTATGACAGCGTC
GAGACCGGCGCGCTGCGTATCGACCTCGGTAGCTTCGGCGAGCCGCAGGCGCTGCGCGAAATACCGCGTTTCTGGCGGGA
AAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (32-175)

• Competence protein (Competence) (208-472)

• Metallo-beta-lactamase superfamily (Lactamase_B) (508-687)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.611	96.257	0.612
comA	Ralstonia pseudosolanacearum GMI1000	35.329	100	0.394