Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SA190iCDA_RS10560 Genome accession   NZ_CP056087
Coordinates   2359035..2359691 (+) Length   218 a.a.
NCBI ID   WP_070886886.1    Uniprot ID   -
Organism   Pseudomonas argentinensis strain SA190     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2354035..2364691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA190iCDA_RS10545 lolD 2354668..2355372 (+) 705 WP_070886884.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  SA190iCDA_RS10550 - 2355372..2356616 (+) 1245 WP_070886885.1 lipoprotein-releasing ABC transporter permease subunit -
  SA190iCDA_RS10555 comA 2356716..2358962 (+) 2247 WP_083329841.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SA190iCDA_RS10560 exbB 2359035..2359691 (+) 657 WP_070886886.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SA190iCDA_RS10565 - 2359688..2360116 (+) 429 WP_070886887.1 ExbD/TolR family protein -
  SA190iCDA_RS10570 lpxK 2360116..2361123 (+) 1008 WP_070886888.1 tetraacyldisaccharide 4'-kinase -
  SA190iCDA_RS10575 - 2361164..2361349 (+) 186 WP_013791977.1 Trm112 family protein -
  SA190iCDA_RS10580 kdsB 2361351..2362115 (+) 765 WP_070886889.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SA190iCDA_RS10585 - 2362115..2362579 (+) 465 WP_070886890.1 low molecular weight protein-tyrosine-phosphatase -
  SA190iCDA_RS10590 murB 2362576..2363595 (+) 1020 WP_070886891.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23637.93 Da        Isoelectric Point: 8.5191

>NTDB_id=458127 SA190iCDA_RS10560 WP_070886886.1 2359035..2359691(+) (exbB) [Pseudomonas argentinensis strain SA190]
MWELVKAGGWVMLPIILCSIAALGIIAERLWTLRVSRVTPPQLLGQVWRWIKDKQLNNQKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHEMERYLNALGTIAGITPLLGLLGTVIAMIDIFGSFVGGSTANPALLAGGISKALITTAS
GLAVAIPALFFHRFLQRRVDELVIGMEQEAIKLVEMVQGERDVDLADEPKPAKGSKKA

Nucleotide


Download         Length: 657 bp        

>NTDB_id=458127 SA190iCDA_RS10560 WP_070886886.1 2359035..2359691(+) (exbB) [Pseudomonas argentinensis strain SA190]
GTGTGGGAACTGGTTAAAGCTGGCGGCTGGGTGATGCTGCCGATCATTCTGTGTTCAATCGCCGCTCTGGGCATCATTGC
CGAGCGCCTATGGACCCTGCGCGTCAGCCGCGTCACGCCGCCGCAGCTGCTGGGGCAGGTATGGCGCTGGATCAAGGACA
AGCAACTCAACAACCAGAAGCTCAAGGAGCTGCGCGCCGACTCGCCGCTGGGCGAAATCCTCGCCGCTGGCCTGGCCAAC
TCCAAGCACGGTCGCGAAATCATGAAGGAGTGTATCGAGGAGGCCGCCGCCCGCGTGGTTCACGAGATGGAGCGCTACCT
CAATGCCCTGGGCACCATCGCCGGCATCACGCCGTTGCTTGGCCTGCTGGGTACGGTGATCGCCATGATCGATATCTTCG
GCTCCTTCGTGGGCGGCAGCACCGCCAACCCGGCGCTGCTCGCTGGCGGCATCTCCAAGGCGCTGATCACCACCGCATCG
GGCCTGGCCGTGGCCATTCCGGCGCTGTTCTTCCACCGTTTCCTGCAGCGCCGCGTCGACGAGCTAGTGATCGGCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAATGGTCCAGGGCGAGCGTGACGTCGACCTGGCCGACGAGCCCAAGCCTGCCAAGG
GGAGCAAGAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.507

94.954

0.812