Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SYNGTS_RS08830 Genome accession   NC_017277
Coordinates   1865660..1866514 (+) Length   284 a.a.
NCBI ID   WP_010872898.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1860660..1871514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNGTS_RS08810 (SYNGTS_1697) - 1862064..1862804 (+) 741 WP_010872894.1 WecB/TagA/CpsF family glycosyltransferase -
  SYNGTS_RS08815 (SYNGTS_1698) - 1863056..1863820 (+) 765 WP_010872895.1 iron uptake porin -
  SYNGTS_RS08820 (SYNGTS_1699) - 1863850..1864290 (+) 441 WP_010872896.1 hypothetical protein -
  SYNGTS_RS08825 (SYNGTS_1700) pilM 1864475..1865578 (+) 1104 WP_010872897.1 type IV pilus biogenesis protein PilM Machinery gene
  SYNGTS_RS08830 (SYNGTS_1701) pilN 1865660..1866514 (+) 855 WP_010872898.1 PilN domain-containing protein Machinery gene
  SYNGTS_RS08835 (SYNGTS_1702) pilO 1866554..1867381 (+) 828 WP_010872899.1 pilus assembly protein Machinery gene
  SYNGTS_RS08840 (SYNGTS_1703) pilQ 1867477..1869819 (+) 2343 WP_020862340.1 type IV pilus secretin PilQ Machinery gene
  SYNGTS_RS08845 (SYNGTS_1704) - 1869828..1870652 (-) 825 WP_010872901.1 FkbM family methyltransferase -
  SYNGTS_RS08850 (SYNGTS_1705) - 1870672..1871406 (-) 735 WP_010872902.1 FkbM family methyltransferase -

Sequence

Protein


Download         Length: 284 a.a.        Molecular weight: 30034.02 Da        Isoelectric Point: 4.1639

>NTDB_id=45797 SYNGTS_RS08830 WP_010872898.1 1865660..1866514(+) (pilN) [Synechocystis sp. PCC 6803]
MYSLDVNFLKDRNSDVVRSTQTTTITLTGDDLQKQMPLYIGAGVMVLLPALAGLGVLLINWQKGVAQTNIQQLETELSQL
QGEQQKIQEVEAKTAAAHQEADGLIGVFNQIKPWSALFQEITNQLPQEVQLQSIQQEGNVITLSGFAGNYGSLNDFLLTL
QSSKFLQANKTKLMTANAAALPITGEGATAETGGTEEPSADQAASGVVIPAGVSYTIQTEITNTPDKELITALIANGAAG
LVARFKFLELKGVLDRPAGIPEVAPILEPPAEGAPGAETPPANN

Nucleotide


Download         Length: 855 bp        

>NTDB_id=45797 SYNGTS_RS08830 WP_010872898.1 1865660..1866514(+) (pilN) [Synechocystis sp. PCC 6803]
ATGTATAGCCTAGATGTAAATTTTCTCAAGGATCGTAACTCTGACGTTGTTCGGTCGACCCAAACTACCACTATCACCCT
AACGGGGGACGATCTACAGAAGCAAATGCCGCTTTATATTGGGGCGGGGGTGATGGTACTTTTGCCTGCTTTGGCGGGGT
TGGGAGTACTGCTAATCAATTGGCAAAAGGGTGTTGCTCAAACCAATATCCAACAATTGGAAACGGAGTTATCCCAGCTA
CAGGGGGAACAGCAAAAAATCCAGGAAGTTGAGGCAAAAACGGCGGCGGCTCACCAAGAAGCAGATGGGCTAATTGGCGT
TTTTAATCAAATTAAACCTTGGTCAGCCCTGTTTCAGGAGATAACTAATCAGTTGCCCCAGGAAGTGCAACTCCAAAGTA
TCCAGCAGGAAGGAAATGTAATCACTCTTTCCGGTTTTGCTGGCAACTATGGCTCCCTCAATGATTTTCTGCTGACTTTG
CAAAGCTCGAAGTTTTTGCAGGCTAATAAAACTAAGCTGATGACAGCCAACGCGGCAGCCCTACCTATTACGGGGGAAGG
GGCAACGGCAGAAACCGGGGGCACAGAGGAGCCAAGTGCAGATCAAGCTGCTTCTGGTGTTGTCATTCCAGCGGGAGTGA
GTTATACCATCCAAACGGAAATTACCAATACCCCCGATAAGGAATTGATAACGGCATTGATCGCCAATGGGGCAGCCGGT
TTAGTGGCTCGTTTCAAGTTTCTGGAACTGAAGGGCGTCTTGGATCGACCTGCGGGAATACCGGAGGTTGCGCCTATTTT
GGAGCCACCGGCGGAGGGAGCTCCTGGAGCAGAAACCCCACCAGCTAATAATTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(116-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Synechocystis sp. PCC 6803

100

100

1

Multiple sequence alignment