Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   SYNGTS_RS08825 Genome accession   NC_017277
Coordinates   1864475..1865578 (+) Length   367 a.a.
NCBI ID   WP_010872897.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6803     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1859475..1870578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNGTS_RS08805 (SYNGTS_1696) - 1860286..1861866 (+) 1581 WP_010872893.1 TolC family protein -
  SYNGTS_RS08810 (SYNGTS_1697) - 1862064..1862804 (+) 741 WP_010872894.1 WecB/TagA/CpsF family glycosyltransferase -
  SYNGTS_RS08815 (SYNGTS_1698) - 1863056..1863820 (+) 765 WP_010872895.1 iron uptake porin -
  SYNGTS_RS08820 (SYNGTS_1699) - 1863850..1864290 (+) 441 WP_010872896.1 hypothetical protein -
  SYNGTS_RS08825 (SYNGTS_1700) pilM 1864475..1865578 (+) 1104 WP_010872897.1 type IV pilus biogenesis protein PilM Machinery gene
  SYNGTS_RS08830 (SYNGTS_1701) pilN 1865660..1866514 (+) 855 WP_010872898.1 PilN domain-containing protein Machinery gene
  SYNGTS_RS08835 (SYNGTS_1702) pilO 1866554..1867381 (+) 828 WP_010872899.1 pilus assembly protein Machinery gene
  SYNGTS_RS08840 (SYNGTS_1703) pilQ 1867477..1869819 (+) 2343 WP_020862340.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 40879.58 Da        Isoelectric Point: 4.2309

>NTDB_id=45796 SYNGTS_RS08825 WP_010872897.1 1864475..1865578(+) (pilM) [Synechocystis sp. PCC 6803]
MFSRFTSLFGRKSSGVGLEITPERVNVAQLTSQGQSYKLRKFGHASIPEGIFEEGKIVDSPALAEIIQELLSENGINTKQ
VATAVPMREAIIRMLPVPAELDENELRDMVLNHEAALYLPYPREEVDLDYQKLGLFEDEDGIEKVQVLLVATRREVTDSY
LDTFQQAGLQVDVLEINSFALIRTIREQLRQFGSREAAVLVDIEFDSTEIAIIVDGVPQFSRTVPIGTYQMQNALSRAMN
LPPSRNPEILQGMTIPVTQFDTMSTQGTAVNPGMNALMRVMGELTDELRRSINFYLNQSEELELVQLLLAGPGGGLIQLD
EYFTQRLSIPTVKIDPFEALAIDTDQNFSDIERPSLATVLGLGIREA

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=45796 SYNGTS_RS08825 WP_010872897.1 1864475..1865578(+) (pilM) [Synechocystis sp. PCC 6803]
ATGTTTAGCCGTTTTACCAGCTTATTTGGCCGTAAATCCTCCGGGGTAGGGCTAGAAATTACCCCAGAAAGGGTTAACGT
CGCCCAACTTACTTCCCAGGGTCAGAGTTATAAACTAAGGAAATTTGGACACGCATCCATTCCGGAGGGAATTTTCGAGG
AAGGAAAGATCGTTGATTCTCCGGCCCTAGCGGAAATTATTCAGGAACTGCTGAGCGAGAATGGCATTAACACCAAGCAG
GTGGCAACAGCGGTACCCATGCGGGAAGCGATCATCCGTATGCTGCCGGTGCCGGCGGAGTTGGACGAAAATGAGTTGCG
CGACATGGTGCTAAATCACGAAGCTGCCCTGTATCTACCCTATCCCAGGGAAGAAGTGGATTTGGATTACCAAAAGCTGG
GCTTGTTTGAAGATGAGGATGGCATTGAGAAAGTGCAAGTGTTGTTAGTGGCTACCCGGCGGGAGGTAACCGATTCCTAT
CTGGACACTTTTCAACAGGCAGGGCTCCAGGTGGACGTGCTAGAAATTAATAGTTTTGCGTTGATTAGAACCATTCGGGA
ACAGTTGCGGCAGTTTGGTTCCCGGGAAGCGGCGGTGCTGGTTGATATTGAGTTCGATAGCACGGAAATTGCCATCATTG
TCGATGGAGTACCCCAGTTTTCCCGCACAGTGCCCATTGGTACTTACCAAATGCAAAATGCCCTTTCCCGGGCAATGAAT
TTGCCCCCTTCCCGCAATCCAGAAATTTTGCAGGGCATGACCATTCCCGTCACCCAGTTTGACACCATGAGCACCCAAGG
CACAGCGGTTAATCCTGGGATGAATGCTCTGATGCGTGTGATGGGGGAACTAACCGACGAGTTGCGACGGTCCATTAACT
TCTACCTCAACCAGAGTGAGGAATTGGAACTAGTGCAGTTACTCTTGGCCGGCCCTGGTGGTGGCCTGATTCAGTTGGAT
GAGTATTTCACCCAACGTTTGAGTATTCCCACCGTCAAAATTGATCCCTTTGAAGCTCTGGCGATCGACACGGATCAGAA
TTTTTCTGACATAGAGCGACCCAGTTTGGCCACGGTTTTGGGTTTAGGTATCCGGGAAGCCTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(282-365)

Type IV pilus assembly protein PilM; (PilM_2)

(17-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

100

100

1

Multiple sequence alignment