Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HWQ56_RS24730 Genome accession   NZ_CP056030
Coordinates   5532205..5533545 (+) Length   446 a.a.
NCBI ID   WP_158153805.1    Uniprot ID   A0A7D5HJE1
Organism   Pseudomonas eucalypticola strain NP-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5527205..5538545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ56_RS24705 (HWQ56_24705) pgeF 5527260..5527994 (-) 735 WP_176571992.1 peptidoglycan editing factor PgeF -
  HWQ56_RS24710 (HWQ56_24710) rluD 5527991..5528953 (-) 963 WP_158153801.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HWQ56_RS24715 (HWQ56_24715) - 5529103..5530128 (+) 1026 WP_158153802.1 outer membrane protein assembly factor BamD -
  HWQ56_RS24720 (HWQ56_24720) - 5530387..5530620 (+) 234 WP_158153803.1 PP0621 family protein -
  HWQ56_RS24725 (HWQ56_24725) pilS 5530610..5532202 (+) 1593 WP_158153804.1 ATP-binding protein Regulator
  HWQ56_RS24730 (HWQ56_24730) pilR 5532205..5533545 (+) 1341 WP_158153805.1 sigma-54 dependent transcriptional regulator Regulator
  HWQ56_RS24735 (HWQ56_24735) thiO 5533604..5534713 (-) 1110 WP_158153806.1 glycine oxidase ThiO -
  HWQ56_RS24740 (HWQ56_24740) - 5534736..5535125 (-) 390 WP_158153807.1 type IV pilin protein -
  HWQ56_RS24745 (HWQ56_24745) - 5535139..5538267 (-) 3129 WP_158153808.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49657.20 Da        Isoelectric Point: 6.3826

>NTDB_id=457969 HWQ56_RS24730 WP_158153805.1 5532205..5533545(+) (pilR) [Pseudomonas eucalypticola strain NP-1]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVKEARDCLAREPFDLCLTDMRLPDGTGLDLVQHIQQRFPQVPVA
MITAYGSLDTAINALKAGAFDFLTKPVDLARLRELVGSALRLQGQTAEQPSIDDRLLGDSPPMLAMRKQIVRLARSQAPV
YISGESGSGKELVARLIHEQGPRADLPFVPVNCGAIPSELMESEFFGHRKGSFTGAMEDKPGLFQAAQGGTLFLDEVADL
PLAMQVKLLRAIQEKAIRSVGGQSEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPSLRERREDIALLANK
VLKRLAHGSGLPPAQLSATALETLKAYRFPGNVRELENMLERAYTLCENERIEASDLRLSDTAPVAEGGVPDLTNVDNLE
DFLENIERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLE

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=457969 HWQ56_RS24730 WP_158153805.1 5532205..5533545(+) (pilR) [Pseudomonas eucalypticola strain NP-1]
ATGAGCCAACGGCAAAAGATCCTGATCGTCGACGATGAGCCGGACATCCGCGAACTCCTGGAAATCACCCTGGGCCGGAT
GAAGCTCGACACCCGCAGCGCGCGCAACGTCAAGGAAGCCCGTGACTGCCTGGCTCGCGAGCCGTTCGACCTGTGTCTCA
CTGACATGCGCCTGCCCGACGGCACCGGGCTGGACCTGGTGCAGCATATCCAGCAGCGTTTTCCCCAGGTGCCGGTGGCC
ATGATCACCGCCTACGGCAGCCTGGACACCGCCATCAATGCCCTCAAGGCTGGCGCATTCGACTTCCTGACCAAACCGGT
GGACCTCGCCCGGCTCCGGGAGCTGGTGGGCAGCGCCCTGCGCCTGCAAGGCCAGACCGCCGAGCAGCCGAGCATCGATG
ACCGCCTGCTGGGCGATTCGCCGCCCATGCTGGCCATGCGCAAACAGATCGTGCGCCTGGCGCGCAGCCAGGCGCCGGTG
TACATCAGTGGTGAGTCGGGCAGCGGCAAGGAGCTAGTCGCCCGGCTGATCCACGAACAGGGTCCACGCGCCGACCTGCC
TTTCGTGCCGGTGAACTGCGGCGCGATTCCCTCGGAATTGATGGAGAGCGAATTCTTCGGCCACCGCAAAGGCAGCTTCA
CCGGCGCCATGGAAGACAAGCCCGGGCTGTTCCAGGCGGCCCAGGGCGGCACGCTGTTCCTCGATGAGGTAGCCGACCTG
CCCTTGGCCATGCAGGTCAAGCTGCTGCGCGCGATTCAGGAAAAGGCCATTCGCAGCGTCGGTGGCCAGAGCGAGGTGGT
GGTGGACGTGCGCATCCTCTGCGCCACCCATAAGGACCTGGCCGCCGAAGTGGCGGCCGGGCGCTTCCGGCAGGACCTGT
ATTACCGGCTCAACGTCATCGAACTGCGCGTGCCATCCCTGCGCGAACGCCGTGAAGACATCGCCCTGCTGGCCAACAAG
GTGCTCAAGCGCCTGGCCCACGGCAGCGGCCTGCCGCCCGCGCAACTCAGCGCCACCGCGCTGGAAACCCTCAAGGCCTA
CCGTTTCCCCGGCAACGTGCGCGAACTGGAGAACATGCTCGAACGTGCGTACACCTTGTGCGAAAACGAGCGCATCGAGG
CCAGCGACCTGCGCCTGAGCGACACCGCGCCCGTGGCCGAGGGCGGTGTGCCAGACTTGACCAACGTGGATAACCTGGAA
GACTTCCTGGAGAACATCGAGCGCAAGCTGATCCTTCAGGCGCTGGAAGAAACTCGCTGGAACCGCACGGCGGCGGCGCA
GCGCCTGAGCCTGTCGTTCAGGTCGATGCGCTACCGCCTGAAAAAGCTGGGGCTGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(402-443)

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D5HJE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

81.49

99.327

0.809
  pilR Acinetobacter baumannii strain A118

49.244

100

0.511