Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HWQ56_RS24725 Genome accession   NZ_CP056030
Coordinates   5530610..5532202 (+) Length   530 a.a.
NCBI ID   WP_158153804.1    Uniprot ID   A0A7D5H3J3
Organism   Pseudomonas eucalypticola strain NP-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5525610..5537202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ56_RS24705 (HWQ56_24705) pgeF 5527260..5527994 (-) 735 WP_176571992.1 peptidoglycan editing factor PgeF -
  HWQ56_RS24710 (HWQ56_24710) rluD 5527991..5528953 (-) 963 WP_158153801.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HWQ56_RS24715 (HWQ56_24715) - 5529103..5530128 (+) 1026 WP_158153802.1 outer membrane protein assembly factor BamD -
  HWQ56_RS24720 (HWQ56_24720) - 5530387..5530620 (+) 234 WP_158153803.1 PP0621 family protein -
  HWQ56_RS24725 (HWQ56_24725) pilS 5530610..5532202 (+) 1593 WP_158153804.1 ATP-binding protein Regulator
  HWQ56_RS24730 (HWQ56_24730) pilR 5532205..5533545 (+) 1341 WP_158153805.1 sigma-54 dependent transcriptional regulator Regulator
  HWQ56_RS24735 (HWQ56_24735) thiO 5533604..5534713 (-) 1110 WP_158153806.1 glycine oxidase ThiO -
  HWQ56_RS24740 (HWQ56_24740) - 5534736..5535125 (-) 390 WP_158153807.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58833.05 Da        Isoelectric Point: 8.6149

>NTDB_id=457968 HWQ56_RS24725 WP_158153804.1 5530610..5532202(+) (pilS) [Pseudomonas eucalypticola strain NP-1]
MSAETFLPGGPQARRMLRLYHLYRLTIGITLILLISSDMDDKLLELANGTWFRNGSWAYLLINIGAVILLEKLRPPGHVF
ALALFDILMLSGLFYAGGGTPSGIGNLMIASVAMSNLLLRGRNGLLIAALGSIGIIYLTFYLNFLRPNGTTNYVQASTLG
VLCFAVALMVQALTRLLRVSENLASQRASDVTNLEELNALILQRMRTGILVLDTVNRVQLANEGALKLIGHYHLNGQLIT
AYSPELVERLLQWRTNPTLRLRSLKFTPTGPSVQPSFIALRRGEQQQTLVFLEDLSQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAGQLLQESETLDPADLRLTQIIKDQSKRMNLIIENVLQLSRRRQAEPQPLDLSSFLQQFLADFRTTATAN
QALHLYVTDGPIETRMDPHHLTQVLTNLVDNGLRYSAHNHGQAQVWLNLFIEPTNGLPILDVLDDGPGFSADQLQHIFEP
FFTTETKGTGLGLYISRELCESNQAHLDYKPRERGGSCLRITFAHARKLT

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=457968 HWQ56_RS24725 WP_158153804.1 5530610..5532202(+) (pilS) [Pseudomonas eucalypticola strain NP-1]
GTGAGCGCTGAGACCTTCCTGCCCGGGGGCCCCCAGGCGCGGCGGATGCTGCGCCTGTACCACCTCTATCGGCTGACGAT
CGGCATCACCCTGATCCTGCTGATTTCCAGCGACATGGACGACAAGCTGCTGGAACTGGCCAACGGCACCTGGTTCCGCA
ACGGCAGCTGGGCCTACCTGCTGATCAACATCGGTGCCGTGATCCTGCTGGAGAAGCTGCGCCCGCCAGGCCACGTATTC
GCCCTGGCACTGTTCGACATTCTCATGCTCTCGGGGCTGTTCTACGCGGGTGGCGGCACGCCCAGCGGCATTGGCAACCT
GATGATCGCCTCGGTGGCCATGAGCAACCTGCTGCTACGCGGGCGCAACGGCCTGCTGATCGCCGCGCTGGGCAGCATCG
GCATCATTTACCTGACGTTCTACCTCAACTTCCTGCGCCCCAATGGCACCACCAACTACGTGCAGGCCAGCACTCTGGGC
GTCCTGTGCTTTGCCGTGGCGCTGATGGTGCAAGCCCTGACACGCCTGCTGCGGGTCAGCGAAAACCTGGCCTCACAGCG
CGCCAGCGACGTCACCAACCTGGAAGAACTCAACGCCCTGATCCTGCAGCGCATGCGCACCGGCATCCTGGTGCTGGACA
CGGTCAACCGCGTGCAACTGGCCAATGAAGGCGCGTTGAAACTGATCGGCCATTACCACCTCAATGGCCAGCTCATCACC
GCCTACTCCCCCGAACTGGTGGAGCGCTTGCTGCAATGGCGCACCAACCCCACGCTGCGCCTGCGCAGCCTGAAGTTCAC
CCCGACCGGGCCATCGGTACAGCCAAGCTTCATCGCCCTGCGCCGCGGCGAGCAGCAACAGACCCTGGTGTTTCTCGAAG
ACCTGTCGCAGATCGCCCAACAGGCCCAGCAACTCAAGCTGGCGGCCTTGGGGCGCCTGACTGCCGGCATCGCCCACGAA
ATCCGCAACCCGCTGGGCGCCATCAGCCATGCCGGCCAACTGCTGCAGGAGTCCGAGACCCTGGACCCAGCCGACCTGCG
CCTGACGCAGATCATCAAGGACCAGTCCAAGCGCATGAACCTGATCATCGAGAACGTGCTGCAACTGTCCCGCCGTCGCC
AGGCCGAGCCGCAGCCGTTGGACCTGAGCAGTTTCCTGCAGCAGTTCCTGGCCGACTTCCGCACCACAGCCACCGCCAAC
CAGGCCCTGCACCTGTACGTCACGGATGGCCCCATCGAAACCCGCATGGACCCGCATCACCTGACCCAGGTGCTGACCAA
CCTGGTGGACAACGGCCTGCGTTACAGCGCCCACAACCATGGCCAGGCCCAGGTTTGGCTGAACCTGTTCATCGAACCGA
CCAACGGCCTGCCGATTCTCGACGTGCTGGATGATGGTCCCGGCTTTTCGGCCGATCAACTGCAACACATCTTCGAACCT
TTCTTCACCACCGAGACCAAAGGAACAGGATTGGGCCTCTACATTTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCACCT
AGACTACAAACCACGTGAGCGCGGTGGCAGTTGCCTGCGAATCACGTTCGCCCATGCACGGAAGCTGACTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D5H3J3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.132

100

0.611