Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HWQ56_RS20760 Genome accession   NZ_CP056030
Coordinates   4674718..4676943 (-) Length   741 a.a.
NCBI ID   WP_176571672.1    Uniprot ID   A0A7D5D9A8
Organism   Pseudomonas eucalypticola strain NP-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4669718..4681943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ56_RS20725 (HWQ56_20725) murB 4670129..4671148 (-) 1020 WP_176571668.1 UDP-N-acetylmuramate dehydrogenase -
  HWQ56_RS20730 (HWQ56_20730) - 4671145..4671609 (-) 465 WP_176571669.1 low molecular weight protein-tyrosine-phosphatase -
  HWQ56_RS20735 (HWQ56_20735) kdsB 4671609..4672373 (-) 765 WP_176571670.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HWQ56_RS20740 (HWQ56_20740) - 4672370..4672555 (-) 186 WP_027977460.1 Trm112 family protein -
  HWQ56_RS20745 (HWQ56_20745) lpxK 4672597..4673598 (-) 1002 WP_176571671.1 tetraacyldisaccharide 4'-kinase -
  HWQ56_RS20750 (HWQ56_20750) - 4673598..4674023 (-) 426 WP_158154290.1 biopolymer transporter ExbD -
  HWQ56_RS20755 (HWQ56_20755) exbB 4674020..4674655 (-) 636 WP_176572454.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HWQ56_RS20760 (HWQ56_20760) comA 4674718..4676943 (-) 2226 WP_176571672.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HWQ56_RS20765 (HWQ56_20765) - 4677092..4677613 (+) 522 WP_176571673.1 DUF2062 domain-containing protein -
  HWQ56_RS20770 (HWQ56_20770) - 4677680..4678459 (-) 780 WP_158154287.1 ABC transporter permease -
  HWQ56_RS20775 (HWQ56_20775) - 4678456..4679388 (-) 933 WP_158154286.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 79812.56 Da        Isoelectric Point: 11.4324

>NTDB_id=457958 HWQ56_RS20760 WP_176571672.1 4674718..4676943(-) (comA) [Pseudomonas eucalypticola strain NP-1]
MRIALLALAIGLVALRFMPLLPPTPWLAAMAAFGLACLGWRRARAPGLVLVGLAWACLHGQWALDDRLAPELDGRTLWLE
GRVGSLPDNQGQSVRFELTDIESARYSLPRTVRLSWFNGPAVSRGERWRVAVTLKRPRGVVNPAGMDIEAWMLARGIGAS
GSVKDGQLLVAAPGSWRDTLRQRLLAVDAQGYQGVLVALVLGDGSAINRDQWAVLQATGTVHLMVISGTHIGLLAGLVYG
LVAGLARWGAWPARLPWLPWACGLAFGAALGYGALAGFGVPVQRACIMLGLVLLWRLRFRHLGVGLPWLVALNAVLLVNP
LVSLLPGFWLSFAAVAVLMLVFAGRLGAWRWWRGWTRAQWLMAVGLLPVLLALGLPISVSGPLANLLAVPWVSIAVLPAA
LLGAALLPIPWVGEALLWLVGGLLAWLFEALTWLSLQAPAWVPPRLPLWLGLLVLAGTLLLLLPAGLPMRPLGWPLVLLA
AWPPLSTVPHGQAQVTQLDVGQGLAAVVRTRHHTVLYDAGPRTPGQDAGERVVLPNLLAMGVRRLDLMLISHAHQDHAGG
APAVQRGLPVAAVWGGEADQLAPGLQASQCESGRQWHWDGVSFTVWRWAAARDSNPSSCVLLVEAQGERLLLGGDIDAAA
ERALVASGLDLRGHWLQSPHHGSRTSSSQRLLDAMAPRGALISRGHGNAFGHPHAQVLQRYQANGMEVHDNALHGALHLR
LGRFDGVRGERQQRRFWRDPT

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=457958 HWQ56_RS20760 WP_176571672.1 4674718..4676943(-) (comA) [Pseudomonas eucalypticola strain NP-1]
ATGCGCATTGCCTTGCTGGCGCTGGCCATTGGCCTGGTTGCCTTGCGGTTCATGCCCCTGCTGCCGCCAACTCCCTGGCT
GGCGGCCATGGCGGCGTTTGGGCTGGCCTGCCTGGGCTGGCGGCGGGCCAGGGCGCCGGGCCTGGTGCTGGTCGGCCTGG
CCTGGGCCTGCCTGCACGGGCAGTGGGCGCTGGATGACCGCCTGGCCCCCGAGCTTGATGGCCGCACCCTCTGGCTGGAA
GGGCGGGTGGGTAGCCTGCCCGACAATCAGGGCCAGTCGGTACGCTTCGAGCTGACTGATATCGAGAGCGCCCGCTATTC
ACTGCCTCGCACCGTGCGCCTGTCGTGGTTCAACGGGCCGGCCGTCAGCCGCGGTGAACGCTGGCGCGTGGCCGTGACCC
TCAAGCGGCCGAGGGGGGTGGTGAACCCGGCCGGCATGGATATCGAGGCGTGGATGCTCGCCCGGGGTATCGGGGCCAGC
GGCAGTGTCAAGGATGGTCAGTTGCTGGTGGCGGCCCCGGGCAGTTGGCGCGATACCCTGCGCCAACGGTTGTTGGCGGT
GGACGCCCAGGGCTACCAGGGTGTGCTGGTGGCGCTGGTGCTGGGTGACGGCTCGGCCATCAACCGCGACCAGTGGGCGG
TGCTGCAGGCCACCGGTACGGTGCATTTGATGGTGATTTCCGGTACCCACATCGGTCTGTTGGCCGGGCTGGTCTACGGC
CTGGTGGCCGGGCTGGCGCGGTGGGGGGCATGGCCGGCCCGCCTGCCGTGGCTACCCTGGGCCTGTGGGCTGGCGTTCGG
CGCGGCCCTGGGGTATGGCGCACTGGCCGGTTTCGGGGTGCCGGTACAGCGGGCGTGCATCATGCTGGGGTTGGTGTTGC
TGTGGCGCCTGCGGTTTCGTCACCTGGGGGTTGGGCTGCCCTGGCTGGTGGCCCTGAACGCGGTGTTGCTGGTCAATCCG
CTGGTCAGTTTGCTACCGGGCTTCTGGCTGTCGTTCGCGGCGGTCGCCGTCCTGATGCTGGTGTTTGCCGGGCGGCTGGG
GGCGTGGCGCTGGTGGCGAGGCTGGACGCGCGCCCAGTGGCTGATGGCGGTGGGGTTGTTGCCGGTCTTGCTGGCGCTGG
GGCTGCCCATCAGCGTCAGCGGCCCGCTGGCCAACTTGCTGGCGGTGCCTTGGGTGAGCATCGCGGTGTTGCCTGCGGCA
TTGCTCGGGGCGGCCCTGTTACCCATTCCATGGGTGGGCGAAGCGTTGTTATGGCTGGTCGGTGGGTTGCTGGCGTGGCT
GTTCGAGGCATTGACGTGGTTGTCGCTGCAGGCGCCTGCCTGGGTGCCCCCGCGATTACCGCTGTGGTTAGGGTTGCTGG
TGCTGGCAGGGACCCTGCTGTTGCTGCTGCCTGCCGGCTTGCCCATGCGCCCATTGGGCTGGCCGTTGGTGCTGCTGGCC
GCCTGGCCGCCGCTTTCGACCGTGCCCCATGGGCAAGCACAGGTGACGCAGCTGGATGTAGGCCAGGGGTTGGCGGCGGT
GGTACGCACCCGTCACCACACCGTTCTCTATGATGCAGGCCCGCGCACCCCCGGGCAGGACGCGGGTGAGCGGGTGGTGC
TGCCCAATCTGCTGGCCATGGGCGTGCGCCGCCTGGACCTGATGCTCATCAGCCACGCCCACCAGGACCATGCCGGTGGT
GCGCCAGCGGTGCAGCGTGGGCTGCCGGTCGCCGCCGTATGGGGAGGCGAGGCTGACCAGTTGGCGCCTGGCTTGCAGGC
TTCGCAGTGCGAGTCCGGGCGGCAATGGCACTGGGACGGGGTCAGCTTTACGGTGTGGCGCTGGGCCGCTGCCCGCGACA
GCAACCCATCGTCGTGCGTATTGCTGGTGGAAGCCCAGGGTGAACGTCTGTTGCTGGGCGGTGACATCGATGCCGCCGCC
GAGCGCGCGCTGGTCGCCAGTGGCCTGGACCTGCGCGGCCACTGGTTGCAGTCCCCTCACCATGGCAGCCGTACCTCGTC
GTCCCAGCGCTTGCTCGATGCCATGGCCCCACGCGGTGCGCTGATTTCCCGTGGCCATGGCAATGCCTTCGGCCACCCGC
ATGCGCAGGTGCTGCAGCGCTACCAGGCCAACGGCATGGAAGTGCATGACAATGCCTTGCACGGCGCCCTGCACCTGCGC
CTGGGGCGTTTCGACGGCGTGCGCGGCGAGCGTCAACAGCGCCGCTTCTGGCGTGATCCGACATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(199-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-686)

Domain of unknown function (DUF4131) (DUF4131)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D5D9A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.444

97.166

0.578
  comA Ralstonia pseudosolanacearum GMI1000

35.561

100

0.402