Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HWQ56_RS20755 Genome accession   NZ_CP056030
Coordinates   4674020..4674655 (-) Length   211 a.a.
NCBI ID   WP_176572454.1    Uniprot ID   A0A7D5DAE5
Organism   Pseudomonas eucalypticola strain NP-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4669020..4679655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ56_RS20720 (HWQ56_20720) - 4669545..4670120 (-) 576 WP_176571667.1 nucleotidyltransferase family protein -
  HWQ56_RS20725 (HWQ56_20725) murB 4670129..4671148 (-) 1020 WP_176571668.1 UDP-N-acetylmuramate dehydrogenase -
  HWQ56_RS20730 (HWQ56_20730) - 4671145..4671609 (-) 465 WP_176571669.1 low molecular weight protein-tyrosine-phosphatase -
  HWQ56_RS20735 (HWQ56_20735) kdsB 4671609..4672373 (-) 765 WP_176571670.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HWQ56_RS20740 (HWQ56_20740) - 4672370..4672555 (-) 186 WP_027977460.1 Trm112 family protein -
  HWQ56_RS20745 (HWQ56_20745) lpxK 4672597..4673598 (-) 1002 WP_176571671.1 tetraacyldisaccharide 4'-kinase -
  HWQ56_RS20750 (HWQ56_20750) - 4673598..4674023 (-) 426 WP_158154290.1 biopolymer transporter ExbD -
  HWQ56_RS20755 (HWQ56_20755) exbB 4674020..4674655 (-) 636 WP_176572454.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HWQ56_RS20760 (HWQ56_20760) comA 4674718..4676943 (-) 2226 WP_176571672.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HWQ56_RS20765 (HWQ56_20765) - 4677092..4677613 (+) 522 WP_176571673.1 DUF2062 domain-containing protein -
  HWQ56_RS20770 (HWQ56_20770) - 4677680..4678459 (-) 780 WP_158154287.1 ABC transporter permease -
  HWQ56_RS20775 (HWQ56_20775) - 4678456..4679388 (-) 933 WP_158154286.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23143.31 Da        Isoelectric Point: 6.4949

>NTDB_id=457957 HWQ56_RS20755 WP_176572454.1 4674020..4674655(-) (exbB) [Pseudomonas eucalypticola strain NP-1]
MWELVKSGGWMMLPIILSSIAALGITAERLWTLRANRVTPPHLLGQVWVWIRDKQLNKEKLKELRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHEMERYISTLGTIAAMAPLLGLLGTVLGMIEIFSSFMGANMATNPAVLAGGISKALVTTA
SGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEMVQGDREVDLAEDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=457957 HWQ56_RS20755 WP_176572454.1 4674020..4674655(-) (exbB) [Pseudomonas eucalypticola strain NP-1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCTGCCCTGGGCATCACCGC
CGAGCGCCTGTGGACTCTGCGTGCCAACCGTGTGACCCCGCCGCATCTGCTGGGCCAGGTGTGGGTCTGGATCCGTGACA
AGCAGTTGAACAAGGAAAAGCTCAAGGAACTGCGCGCCGATTCCCCCCTGGGCGAGATCCTCGCCGCTGGCCTGGCCAAC
TCGCGCCACGGCCGTGAAATCATGAAGGAATGCATCGAGGAAGCGGCTGCCCGCGTCATCCACGAAATGGAGCGCTACAT
CAGCACCCTCGGTACCATCGCCGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGCTGGGCATGATCGAGATCTTCA
GTTCGTTCATGGGCGCCAACATGGCCACCAACCCCGCTGTGCTGGCCGGGGGTATCTCCAAGGCCCTGGTGACCACGGCC
TCGGGCCTGATGGTGGGTATTCCCGCGGTGTTCTTCCACCGCTTCCTGCAGCGCCGCATCGACGAGCTGGTGGTGGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAATGGTGCAGGGTGACCGCGAAGTCGATCTGGCCGAGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D5DAE5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.991

100

0.82