Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   JJB22_RS13440 Genome accession   NZ_CP067307
Coordinates   2856357..2857013 (-) Length   218 a.a.
NCBI ID   WP_208782352.1    Uniprot ID   -
Organism   Escherichia coli strain ABW_A19     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2851357..2862013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB22_RS13410 (JJB22_13405) yecA 2852609..2853274 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  JJB22_RS13430 (JJB22_13425) pgsA 2853923..2854471 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  JJB22_RS13435 (JJB22_13430) uvrC 2854528..2856360 (-) 1833 WP_208782350.1 excinuclease ABC subunit UvrC Machinery gene
  JJB22_RS13440 (JJB22_13435) letA 2856357..2857013 (-) 657 WP_208782352.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  JJB22_RS27325 - 2857155..2857226 (+) 72 Protein_2668 transcriptional regulator -
  JJB22_RS13445 (JJB22_13440) yecU 2857309..2857485 (+) 177 WP_000590347.1 protein YecU -
  JJB22_RS13450 (JJB22_13445) yecF 2857472..2857696 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  JJB22_RS13455 (JJB22_13450) sdiA 2857763..2858485 (-) 723 WP_001154273.1 transcriptional regulator SdiA -
  JJB22_RS13460 (JJB22_13455) tcyN 2858715..2859467 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  JJB22_RS13465 (JJB22_13460) tcyL 2859464..2860132 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  JJB22_RS13470 (JJB22_13465) dcyD 2860147..2861133 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23920.71 Da        Isoelectric Point: 6.9614

>NTDB_id=457797 JJB22_RS13440 WP_208782352.1 2856357..2857013(-) (letA) [Escherichia coli strain ABW_A19]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNVETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=457797 JJB22_RS13440 WP_208782352.1 2856357..2857013(-) (letA) [Escherichia coli strain ABW_A19]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGTGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486