Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HV560_RS06630 Genome accession   NZ_CP055305
Coordinates   1369662..1371041 (-) Length   459 a.a.
NCBI ID   WP_176812457.1    Uniprot ID   -
Organism   Mannheimia pernigra strain 17CN0883     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1364662..1376041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV560_RS06600 (HV560_06600) - 1364890..1366128 (-) 1239 WP_176812455.1 multifunctional CCA addition/repair protein -
  HV560_RS06605 (HV560_06605) nth 1366161..1366796 (-) 636 WP_176808290.1 endonuclease III -
  HV560_RS06610 (HV560_06610) - 1366799..1367563 (-) 765 WP_176812456.1 TSUP family transporter -
  HV560_RS06615 (HV560_06615) proB 1367563..1368654 (-) 1092 WP_159629587.1 glutamate 5-kinase -
  HV560_RS06620 (HV560_06620) - 1368768..1369262 (+) 495 WP_159629590.1 dihydrofolate reductase -
  HV560_RS06625 (HV560_06625) - 1369390..1369623 (+) 234 WP_159629593.1 YgjV family protein -
  HV560_RS06630 (HV560_06630) radA 1369662..1371041 (-) 1380 WP_176812457.1 DNA repair protein RadA Machinery gene
  HV560_RS06635 (HV560_06635) pilA 1371222..1371671 (+) 450 WP_176812458.1 prepilin peptidase-dependent pilin Machinery gene
  HV560_RS06640 (HV560_06640) pilB 1371693..1373093 (+) 1401 WP_176812459.1 GspE/PulE family protein Machinery gene
  HV560_RS06645 (HV560_06645) pilC 1373077..1374270 (+) 1194 WP_176812460.1 type II secretion system F family protein Machinery gene
  HV560_RS06650 (HV560_06650) - 1374273..1374929 (+) 657 WP_176812461.1 prepilin peptidase -
  HV560_RS06655 (HV560_06655) coaE 1374961..1375599 (+) 639 WP_176812462.1 dephospho-CoA kinase -
  HV560_RS06660 (HV560_06660) yacG 1375581..1375766 (+) 186 WP_159629615.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49816.42 Da        Isoelectric Point: 8.3900

>NTDB_id=457505 HV560_RS06630 WP_176812457.1 1369662..1371041(-) (radA) [Mannheimia pernigra strain 17CN0883]
MAKAPKTAYVCNDCGAEYSRWMGQCRECKAWNTISEVRLISSKESAKSDRFSGYAGKTSGKVQALSDISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLAQNIPTLYVTGEESLQQVAMRANRLGLPAQNLKMLSETSVEH
ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSHKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALMSSFRNRPLPQDLVIFGEVG
LAGEIRPVTSGQERISEAAKHGFRRAIIPHGNAPKKPIKDMDVFTVKKLSDALDILYNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=457505 HV560_RS06630 WP_176812457.1 1369662..1371041(-) (radA) [Mannheimia pernigra strain 17CN0883]
ATGGCAAAAGCACCTAAAACCGCCTATGTTTGTAATGATTGTGGGGCGGAATACTCCCGTTGGATGGGGCAATGCCGTGA
ATGTAAGGCTTGGAATACCATCAGCGAAGTTAGGTTGATTTCGAGTAAAGAATCAGCAAAATCTGACCGCTTTAGTGGTT
ACGCAGGTAAAACATCAGGCAAAGTGCAAGCACTTTCAGATATTAGCCTGCAAGAAGTGCCTCGCTTTAGCAGTGGTTTT
AATGAGCTAGATCGTGTGCTAGGTGGGGGGGTTGTACCAGGTTCTGCCATTCTTATTGGCGGACACCCTGGTGCAGGCAA
AAGTACGCTTTTACTCCAAGTAATGTGTGGCTTAGCTCAAAATATCCCTACTCTTTATGTTACAGGTGAGGAATCTTTGC
AGCAAGTGGCAATGCGTGCTAACCGTTTAGGTTTACCTGCACAAAATCTTAAAATGCTATCTGAAACCTCCGTTGAGCAT
ATTTGCAATATTGCCGATCAAGAAAAACCTAAAATTATGGTAATCGATTCTATTCAAGTGATGCACTTATCCGATATTCA
ATCCTCTCCAGGAAGCGTTTCACAGGTTCGAGAATGTGCTTCATTTTTAACTCGTTATGCTAAAACCCGCCAAGTCGCCA
TTATTATGGTAGGGCATGTCACTAAAGATGGGACACTTGCTGGCCCAAAAGTATTGGAACACGCTATTGATGCTTCATTA
TTACTTGAAGGCGAATCCGATTCTCGATTCCGCACTTTGCGTAGCCATAAAAACCGTTTTGGTGCAGTAAATGAGCTAGG
TGTATTCGCAATGACTGAGCAGGGCTTGAAAGAGGTTAAAAATCCCTCTGCAATTTTCCTTAGCCGTAGCGAAGAACAAA
CGCCTGGTAGCTCTGTAATGGTGTTGTGGGAAGGAACTCGCCCACTTCTAGTTGAAATTCAGGCTCTAGTCGATCATTCA
ATGCTAGCAAATCCTCGCCGTGTCGCCGTTGGTTTAGATCATAACCGTTTATCGCTACTGCTTGCAGTTTTACATCGACA
CGGCGGACTACAAATGTCAGATCAAGACGTGTTTGTCAACGTCGTAGGCGGTGTGAAAGTAACCGAAACCAGTGCCGATC
TGGCTCTGATCTTGGCTTTAATGTCTAGCTTTCGCAATCGCCCATTACCACAAGATTTAGTTATTTTTGGCGAGGTGGGA
TTAGCAGGGGAAATCCGTCCTGTGACTAGCGGACAAGAACGAATTAGTGAAGCAGCAAAACACGGTTTTAGGCGAGCCAT
CATTCCCCACGGTAATGCGCCTAAAAAGCCGATTAAAGATATGGACGTTTTTACTGTTAAAAAACTAAGTGATGCGTTAG
ATATTCTTTATAATTTATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

AAA domain (AAA_25)

(84-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

99.564

0.481
  radA Streptococcus mitis NCTC 12261

44.273

98.911

0.438
  radA Streptococcus mitis SK321

44.053

98.911

0.436
  radA Streptococcus pneumoniae Rx1

43.355

100

0.434
  radA Streptococcus pneumoniae D39

43.355

100

0.434
  radA Streptococcus pneumoniae R6

43.355

100

0.434
  radA Streptococcus pneumoniae TIGR4

43.355

100

0.434