Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HV561_RS06935 Genome accession   NZ_CP055302
Coordinates   1341793..1343172 (-) Length   459 a.a.
NCBI ID   WP_176808292.1    Uniprot ID   -
Organism   Mannheimia pernigra strain 16CN0041     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1336793..1348172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV561_RS06900 (HV561_06900) - 1337263..1337562 (-) 300 WP_176809010.1 helix-turn-helix domain-containing protein -
  HV561_RS06905 (HV561_06905) - 1337738..1338031 (+) 294 WP_176808265.1 hypothetical protein -
  HV561_RS06910 (HV561_06910) nth 1338292..1338927 (-) 636 WP_176808290.1 endonuclease III -
  HV561_RS06915 (HV561_06915) - 1338930..1339694 (-) 765 WP_176808291.1 TSUP family transporter -
  HV561_RS06920 (HV561_06920) proB 1339694..1340785 (-) 1092 WP_159629587.1 glutamate 5-kinase -
  HV561_RS06925 (HV561_06925) - 1340899..1341393 (+) 495 WP_159629590.1 dihydrofolate reductase -
  HV561_RS06930 (HV561_06930) - 1341521..1341754 (+) 234 WP_159629593.1 YgjV family protein -
  HV561_RS06935 (HV561_06935) radA 1341793..1343172 (-) 1380 WP_176808292.1 DNA repair protein RadA Machinery gene
  HV561_RS06940 (HV561_06940) pilA 1343353..1343796 (+) 444 WP_176808293.1 prepilin peptidase-dependent pilin Machinery gene
  HV561_RS06945 (HV561_06945) pilB 1343818..1345218 (+) 1401 WP_176808294.1 GspE/PulE family protein Machinery gene
  HV561_RS06950 (HV561_06950) pilC 1345202..1346395 (+) 1194 WP_176808295.1 type II secretion system F family protein Machinery gene
  HV561_RS06955 (HV561_06955) - 1346398..1347054 (+) 657 WP_176808296.1 prepilin peptidase -
  HV561_RS11440 (HV561_06960) coaE 1347086..1347722 (+) 637 Protein_1331 dephospho-CoA kinase -
  HV561_RS11445 yacG 1347704..1347889 (+) 186 WP_159629615.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49817.36 Da        Isoelectric Point: 7.9649

>NTDB_id=457481 HV561_RS06935 WP_176808292.1 1341793..1343172(-) (radA) [Mannheimia pernigra strain 16CN0041]
MAKAPKTAYVCNDCGAEYSRWMGQCRECKAWNTISEVRLISSKESAKSDRFSGYAGETSGKVQALSDISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLAQNIPTLYVTGEESLQQVAMRANRLGLPAQNLKMLSETSVEH
ICNIADQEKPKIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSHKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTPGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALMSSFRNRPLPQDLVIFGEVG
LAGEIRPVTSGQERISEAAKHGFRRAIIPHGNAPKKPIKDMDVFTVKKLSDALDILYNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=457481 HV561_RS06935 WP_176808292.1 1341793..1343172(-) (radA) [Mannheimia pernigra strain 16CN0041]
ATGGCAAAAGCACCTAAAACCGCCTATGTTTGTAATGATTGTGGGGCGGAATACTCCCGTTGGATGGGGCAATGCCGTGA
ATGTAAGGCTTGGAATACCATCAGCGAAGTTAGGTTGATTTCGAGTAAAGAGTCAGCAAAATCTGACCGCTTTAGTGGTT
ACGCAGGTGAAACATCAGGCAAAGTGCAAGCACTTTCAGATATTAGCCTGCAAGAAGTGCCTCGCTTTAGCAGTGGTTTT
AATGAGCTAGATCGTGTGCTAGGTGGGGGGGTTGTACCAGGTTCTGCCATTCTTATTGGCGGACACCCTGGTGCAGGCAA
AAGTACGCTTTTACTCCAAGTAATGTGTGGCTTAGCTCAAAATATCCCTACTCTTTATGTTACAGGTGAGGAATCTTTGC
AGCAAGTGGCAATGCGTGCTAACCGTTTAGGTTTACCTGCACAAAATCTTAAAATGCTATCTGAAACCTCCGTTGAGCAT
ATTTGCAATATTGCCGATCAAGAAAAACCTAAAATTATGGTAATCGATTCTATTCAAGTGATGCACTTATCCGATATTCA
ATCCTCTCCAGGAAGCGTTTCACAGGTTCGAGAATGTGCTTCATTTTTAACTCGTTATGCTAAAACCCGCCAAGTCGCCA
TTATTATGGTAGGGCATGTCACTAAAGATGGGACACTTGCTGGCCCAAAAGTATTGGAACACGCTATTGATGCTTCATTA
TTACTTGAAGGGGAGTCCGATTCTCGATTCCGCACTTTGCGTAGCCATAAAAATCGTTTTGGTGCAGTAAATGAGTTAGG
TGTATTCGCAATGACTGAGCAGGGCTTGAAAGAAGTTAAAAATCCCTCTGCAATTTTCCTTAGCCGTAGCGAAGAACAAA
CGCCTGGTAGCTCTGTAATGGTGTTGTGGGAAGGAACTCGCCCGCTTCTAGTTGAAATTCAGGCTCTAGTCGATCATTCA
ATGCTAGCAAATCCTCGCCGTGTCGCCGTTGGTTTAGATCATAACCGTTTATCGCTACTGCTTGCGGTTTTACATCGACA
CGGCGGACTACAAATGTCAGATCAAGACGTGTTTGTCAACGTCGTAGGTGGTGTGAAAGTAACCGAAACCAGTGCCGATC
TGGCTCTGATCTTGGCTTTAATGTCTAGCTTTCGCAATCGCCCATTACCACAAGATTTAGTTATTTTTGGCGAGGTGGGA
TTAGCAGGGGAAATCCGTCCTGTGACTAGCGGACAAGAACGAATTAGTGAAGCAGCAAAACACGGCTTTAGGCGAGCCAT
CATTCCCCACGGTAATGCACCTAAAAAGCCGATTAAAGATATGGATGTTTTTACTGTAAAAAAACTAAGTGATGCGTTAG
ATATTCTTTATAATTTATAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(84-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

99.564

0.481
  radA Streptococcus mitis NCTC 12261

43.833

98.911

0.434
  radA Streptococcus mitis SK321

43.612

98.911

0.431
  radA Streptococcus pneumoniae Rx1

42.919

100

0.429
  radA Streptococcus pneumoniae D39

42.919

100

0.429
  radA Streptococcus pneumoniae R6

42.919

100

0.429
  radA Streptococcus pneumoniae TIGR4

42.919

100

0.429