Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   JJB16_RS13315 Genome accession   NZ_CP067250
Coordinates   2790530..2791006 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain ESBL_DR28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2785530..2796006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJB16_RS13280 (JJB16_13275) - 2785826..2786281 (+) 456 WP_000581504.1 IrmA family protein -
  JJB16_RS13285 (JJB16_13280) - 2786360..2786503 (+) 144 Protein_2634 DUF905 family protein -
  JJB16_RS13290 (JJB16_13285) - 2786611..2788150 (-) 1540 Protein_2635 IS66-like element ISEc22 family transposase -
  JJB16_RS13295 (JJB16_13290) tnpB 2788199..2788546 (-) 348 WP_000612626.1 IS66 family insertion sequence element accessory protein TnpB -
  JJB16_RS13300 (JJB16_13295) - 2788543..2788947 (-) 405 WP_000839179.1 transposase -
  JJB16_RS13305 (JJB16_13300) - 2789156..2789974 (+) 819 WP_001234620.1 DUF932 domain-containing protein -
  JJB16_RS13310 (JJB16_13305) - 2790029..2790514 (+) 486 WP_000849582.1 antirestriction protein -
  JJB16_RS13315 (JJB16_13310) radC 2790530..2791006 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  JJB16_RS13320 (JJB16_13315) yeeT 2791075..2791296 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  JJB16_RS13325 (JJB16_13320) - 2791459..2791827 (+) 369 Protein_2642 type IV toxin-antitoxin system YeeU family antitoxin -
  JJB16_RS13330 (JJB16_13325) - 2791917..2792294 (+) 378 WP_042048782.1 TA system toxin CbtA family protein -
  JJB16_RS13335 (JJB16_13330) - 2792291..2792440 (+) 150 Protein_2644 DUF5983 family protein -
  JJB16_RS13340 (JJB16_13335) - 2792540..2792620 (+) 81 Protein_2645 hypothetical protein -
  JJB16_RS24210 - 2793436..2793807 (+) 372 WP_001295631.1 IS110 family transposase -
  JJB16_RS24215 - 2794078..2794443 (+) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  JJB16_RS13355 (JJB16_13350) tmaR 2794544..2794873 (-) 330 WP_000450409.1 DUF496 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=457482 JJB16_RS13315 WP_001186725.1 2790530..2791006(+) (radC) [Escherichia coli strain ESBL_DR28]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=457482 JJB16_RS13315 WP_001186725.1 2790530..2791006(+) (radC) [Escherichia coli strain ESBL_DR28]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TTGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399