Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   HUK62_RS04220 Genome accession   NZ_CP055277
Coordinates   919868..920266 (+) Length   132 a.a.
NCBI ID   WP_114836792.1    Uniprot ID   A0A7H8SDP5
Organism   Acinetobacter sp. NEB 394     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 914868..925266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS04205 (HUK62_04205) - 915857..918163 (+) 2307 WP_004979149.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  HUK62_RS04210 (HUK62_04210) - 918202..918969 (-) 768 WP_176537172.1 SDR family oxidoreductase -
  HUK62_RS04215 (HUK62_04215) mazG 919088..919849 (+) 762 WP_176537173.1 nucleoside triphosphate pyrophosphohydrolase -
  HUK62_RS04220 (HUK62_04220) comEA 919868..920266 (+) 399 WP_114836792.1 ComEA family DNA-binding protein Machinery gene
  HUK62_RS04225 (HUK62_04225) pcnB 920404..921873 (+) 1470 WP_176537174.1 polynucleotide adenylyltransferase PcnB -
  HUK62_RS04230 (HUK62_04230) folK 921870..922358 (+) 489 WP_078425168.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  HUK62_RS04235 (HUK62_04235) panB 922395..923204 (+) 810 WP_004692301.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HUK62_RS04240 (HUK62_04240) panC 923208..924050 (+) 843 WP_125274089.1 pantoate--beta-alanine ligase -
  HUK62_RS04245 (HUK62_04245) rapZ 924077..924928 (+) 852 WP_004692298.1 RNase adapter RapZ -
  HUK62_RS04250 (HUK62_04250) - 924925..925194 (+) 270 WP_010325935.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14651.16 Da        Isoelectric Point: 10.8498

>NTDB_id=457374 HUK62_RS04220 WP_114836792.1 919868..920266(+) (comEA) [Acinetobacter sp. NEB 394]
MIKIKVSLLIIALLLLSLLAWVPSSYAQSFDQNYLNWKAEQQAWDDRIQAPKSVKRAVSPVQAQPVLSANKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=457374 HUK62_RS04220 WP_114836792.1 919868..920266(+) (comEA) [Acinetobacter sp. NEB 394]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTACTGAGTCTACTGGCTTGGGTACCCAGTAGTTATGC
ACAGTCTTTTGATCAGAACTACCTGAACTGGAAAGCAGAGCAGCAGGCGTGGGATGATCGTATTCAAGCGCCAAAGAGCG
TGAAACGTGCTGTGTCTCCTGTTCAGGCTCAACCTGTGTTGAGCGCAAATAAAATTAGTTTAAATCAAGCCAGTGTCGAT
CAATTACAGCAGCTTCAGGGTGTGGGTTTAAAAAAGGCACAGGCAATTGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GACCATAGATGAACTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACTCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SDP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

53.279

92.424

0.492
  comEA Acinetobacter baumannii D1279779

50.806

93.939

0.477
  comEA Acinetobacter baylyi ADP1

44.86

81.061

0.364