Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HUK62_RS02475 Genome accession   NZ_CP055277
Coordinates   548035..549456 (-) Length   473 a.a.
NCBI ID   WP_176537003.1    Uniprot ID   A0A7H8SEQ5
Organism   Acinetobacter sp. NEB 394     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 543035..554456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS02460 (HUK62_02460) lptG 544096..545166 (+) 1071 WP_176537000.1 LPS export ABC transporter permease LptG -
  HUK62_RS02465 (HUK62_02465) gpmI 545289..546836 (+) 1548 WP_176537001.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  HUK62_RS02470 (HUK62_02470) - 546855..548030 (+) 1176 WP_176537002.1 S41 family peptidase -
  HUK62_RS02475 (HUK62_02475) pilR 548035..549456 (-) 1422 WP_176537003.1 sigma-54 dependent transcriptional regulator Regulator
  HUK62_RS02480 (HUK62_02480) pilS 549472..551040 (-) 1569 WP_176537004.1 ATP-binding protein Regulator
  HUK62_RS02485 (HUK62_02485) - 551062..551697 (-) 636 WP_004692836.1 response regulator -
  HUK62_RS02490 (HUK62_02490) - 551913..552968 (+) 1056 WP_176537005.1 serine hydrolase -
  HUK62_RS02495 (HUK62_02495) - 553098..554335 (+) 1238 Protein_482 IS3 family transposase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53274.39 Da        Isoelectric Point: 6.5065

>NTDB_id=457364 HUK62_RS02475 WP_176537003.1 548035..549456(-) (pilR) [Acinetobacter sp. NEB 394]
MEKKPLVLLVDDEQDLCTLMQMSLSRMGIDTHIAYRLQEAVQALKTHQYDACLTDLNLPDGNGLSLVDFIAQNYPNLPVA
VLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKAFNQPISQLHIQEDTLEHRLLIGQSLPIQQLRITLKKIARSQ
APVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHRKGSFTGATQDKQGLILSAHGGSLFLDEI
AELPLTMQVKLLRAVQEKRIRPIGSDTEIDVDFRVISASHQDLEALVQQGKFRQDLYFRIHVMDIVLPALRERGNDIILL
AQHFIQKICQEWDIPVKALSERAREFLLAQYYPGNVRELRNMMERAITLSDESSIDLPHLQTAPLRPIAQTNYANATQQV
PVSNDQLSHVPSRKLPEEGLELYLEKIEKEILMNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDGEDDSV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=457364 HUK62_RS02475 WP_176537003.1 548035..549456(-) (pilR) [Acinetobacter sp. NEB 394]
GTGGAAAAAAAACCACTTGTTTTATTGGTGGATGACGAACAAGACTTATGTACACTGATGCAAATGTCTTTAAGTCGGAT
GGGGATTGATACACATATTGCCTATCGCTTACAAGAGGCGGTTCAAGCCCTGAAAACGCATCAATATGATGCCTGTCTAA
CCGATCTGAATTTACCCGATGGTAATGGTCTGAGCTTGGTCGATTTTATTGCTCAAAATTATCCTAATTTGCCTGTTGCA
GTGCTGACTGCTTACGGCAATATGGATATTGCGATTGCAGCACTTAAAGCTGGTGCTTTTGATTTTGTCAGCAAACCGAT
CAACCAAAAACATTTAGAGCAACTTTTACAAAAAGCCTTTAATCAGCCCATCAGTCAGCTGCATATCCAAGAAGATACGC
TTGAACATCGTCTGCTGATTGGTCAGTCCCTTCCTATTCAGCAGCTACGTATCACCTTAAAGAAAATTGCACGCTCGCAA
GCCCCTGTCTTTATTACAGGTGAGTCAGGCACTGGCAAAGAAGTGGTGGCGAATCTGGTACATCGCCTGAGCAATCGTAA
TGAAGGGCCATTTATTGCCATTAACTGCGGTGCCATACCGACTGAACTGATGGAAAGTGAATTGTTTGGACACCGTAAGG
GTAGCTTTACAGGGGCGACTCAAGACAAACAAGGGCTGATTCTATCTGCGCATGGCGGCAGTTTATTTTTAGATGAAATT
GCCGAGTTACCGCTCACTATGCAGGTGAAACTGCTGCGCGCGGTACAAGAAAAACGCATTCGCCCCATTGGGAGTGACAC
CGAAATTGATGTCGATTTTCGTGTGATTAGTGCCAGCCATCAAGACCTAGAAGCACTGGTACAACAAGGCAAGTTCCGTC
AGGATTTGTACTTCCGCATCCATGTCATGGACATTGTACTGCCAGCCCTACGTGAGCGTGGCAATGACATTATTCTTTTA
GCACAACATTTCATTCAGAAAATCTGCCAAGAATGGGACATCCCAGTCAAAGCATTGAGTGAACGTGCACGTGAGTTTTT
ATTGGCCCAATATTATCCAGGCAATGTGCGTGAACTACGCAATATGATGGAACGTGCCATCACTTTAAGTGATGAAAGCA
GTATCGACTTACCACACTTGCAAACAGCTCCACTGCGACCAATTGCTCAGACTAACTATGCCAATGCCACCCAACAAGTT
CCTGTTAGCAATGATCAACTCAGTCATGTGCCTTCGCGTAAATTGCCCGAAGAGGGTTTAGAGCTATATTTAGAAAAAAT
TGAAAAAGAAATTTTGATGAATGCGCTCAATCTCACCCATTGGAACCGAACACTGGCGGCTAAAAAGCTCGGTATGTCTT
TCCGTTCTTTACGTTATCGCTTGAAGAAATTCGGGCTAGATGGCGAAGACGATTCCGTTTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SEQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.681

99.366

0.742
  pilR Pseudomonas aeruginosa PAK

49.353

98.097

0.484