Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HUK62_RS02480 Genome accession   NZ_CP055277
Coordinates   549472..551040 (-) Length   522 a.a.
NCBI ID   WP_176537004.1    Uniprot ID   -
Organism   Acinetobacter sp. NEB 394     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 544472..556040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK62_RS02465 (HUK62_02465) gpmI 545289..546836 (+) 1548 WP_176537001.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  HUK62_RS02470 (HUK62_02470) - 546855..548030 (+) 1176 WP_176537002.1 S41 family peptidase -
  HUK62_RS02475 (HUK62_02475) pilR 548035..549456 (-) 1422 WP_176537003.1 sigma-54 dependent transcriptional regulator Regulator
  HUK62_RS02480 (HUK62_02480) pilS 549472..551040 (-) 1569 WP_176537004.1 ATP-binding protein Regulator
  HUK62_RS02485 (HUK62_02485) - 551062..551697 (-) 636 WP_004692836.1 response regulator -
  HUK62_RS02490 (HUK62_02490) - 551913..552968 (+) 1056 WP_176537005.1 serine hydrolase -
  HUK62_RS02495 (HUK62_02495) - 553098..554335 (+) 1238 Protein_482 IS3 family transposase -
  HUK62_RS02500 (HUK62_02500) thrC 554386..555525 (-) 1140 WP_004692833.1 threonine synthase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59750.29 Da        Isoelectric Point: 6.5800

>NTDB_id=457365 HUK62_RS02480 WP_176537004.1 549472..551040(-) (pilS) [Acinetobacter sp. NEB 394]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPVLYRSVLIGFIFISAFQLLSLKHVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACTLLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQVNDPEQALLHNMIAKQASRIDKIIGDTLSMARSKETYPTLIDVAAFLERFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNADEAEHIQIRVYSYKNLVHIEVRDFGEGVAKQDQTALFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=457365 HUK62_RS02480 WP_176537004.1 549472..551040(-) (pilS) [Acinetobacter sp. NEB 394]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCGTCTTATCGACTGTTTATTGG
CTGTTGTTTGTTGTTGGTTTATCTACTGACCTATGAGCAGTTGTTTTCAAATTATCAATATCCAGTATTGTATCGTTCTG
TCCTGATTGGCTTTATTTTTATCAGTGCCTTTCAGCTATTGAGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACTTTGCTGTTTATTGTCGATGTCATTAGCCTCAGTTTACTCACTTTTGCCACCGATGGTCCGAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATTACCTTGATTGCTGTAA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCATTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTACGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAACTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTGCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCATGTACATTATTGGGCATCTCCCCGATTTATGCCTATGACAAA
TATCCTTTATATAAGGCACAGCCTGATTTATTTGAACTCCTTAAATTCGACCAACTGAAAAATGGGGAAAAATTCCAATT
TACATCCCAGCTGAGTCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAAACACTCACCTTATTCG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAATCCACTGGCAGCCATCACGCAAGCCAATGAATTGATGCAGGTGAACGATCCTGAGCAAGCCCT
GTTACATAACATGATCGCCAAACAAGCCTCACGGATTGATAAAATTATTGGCGATACACTGAGCATGGCACGCAGTAAAG
AAACCTATCCAACCCTAATTGATGTCGCCGCTTTTTTAGAACGTTTTATCGTTGAAGATTTGCCCGATGTCAAAGATCAA
ATTGATTACCGCATCTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGACAAGTGCTGATCAACCTGATTCG
AAATGCCATTCGGCATAATGCGGATGAAGCCGAGCACATTCAAATTCGTGTCTATAGCTATAAAAACCTCGTCCATATTG
AGGTCCGCGATTTTGGTGAAGGGGTCGCCAAACAGGATCAAACCGCCCTGTTTCAACCGTTTTTTAGTACCTCCATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.885

99.808

0.598