Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HU255_RS11115 Genome accession   NZ_CP055232
Coordinates   2421305..2421817 (-) Length   170 a.a.
NCBI ID   WP_010720497.1    Uniprot ID   A0A1V8XB86
Organism   Enterococcus hirae strain 708     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2416305..2426817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU255_RS13785 - 2416762..2417013 (+) 252 WP_256736250.1 hypothetical protein -
  HU255_RS11095 (HU255_11095) rplI 2417818..2418270 (-) 453 WP_010720494.1 50S ribosomal protein L9 -
  HU255_RS11100 (HU255_11100) - 2418276..2420249 (-) 1974 WP_063626389.1 DHH family phosphoesterase -
  HU255_RS11105 (HU255_11105) - 2420488..2420895 (+) 408 WP_063626388.1 hypothetical protein -
  HU255_RS11110 (HU255_11110) rpsR 2421043..2421279 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  HU255_RS11115 (HU255_11115) ssb 2421305..2421817 (-) 513 WP_010720497.1 single-stranded DNA-binding protein Machinery gene
  HU255_RS11120 (HU255_11120) rpsF 2421869..2422168 (-) 300 WP_010720498.1 30S ribosomal protein S6 -
  HU255_RS11125 (HU255_11125) gyrA 2422568..2425066 (-) 2499 WP_010720499.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18703.22 Da        Isoelectric Point: 4.5567

>NTDB_id=457103 HU255_RS11115 WP_010720497.1 2421305..2421817(-) (ssb) [Enterococcus hirae strain 708]
MINNVVLVGRLTKDPDLRYTSSGTAVATFTLAVNRNFTSQNGNREADFINCVIWRKSAETLANYARKGTLLGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQLLESRAASENRQQTGGYQSSGQSTNDFGGSNNYNQTSQSSNGMPDFDRDNSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=457103 HU255_RS11115 WP_010720497.1 2421305..2421817(-) (ssb) [Enterococcus hirae strain 708]
TTGATTAATAATGTTGTACTAGTTGGACGTCTAACTAAAGATCCGGATTTACGATATACATCAAGTGGCACTGCAGTAGC
AACGTTTACTTTAGCTGTTAATCGTAATTTTACTAGCCAAAACGGCAATCGTGAGGCTGACTTTATTAATTGTGTGATTT
GGCGTAAATCAGCAGAGACATTAGCAAACTATGCTCGTAAGGGGACTCTTTTAGGAGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTAACAGAAGTAGTTGCTGAAAACTTCCAATTATTGGAAAGTCGTGC
TGCATCTGAAAATCGTCAACAAACTGGCGGTTACCAAAGCTCTGGTCAATCGACAAATGATTTTGGCGGAAGTAATAACT
ATAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTTGATCGTGACAATTCTGATCCATTTGGTTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V8XB86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.628

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.542

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376