Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HUZ39_RS09345 | Genome accession | NZ_CP055199 |
| Coordinates | 1941038..1941511 (-) | Length | 157 a.a. |
| NCBI ID | WP_015973878.1 | Uniprot ID | - |
| Organism | Shigella flexneri strain STEFF_3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1935222..1962160 | 1941038..1941511 | within | 0 |
Gene organization within MGE regions
Location: 1935222..1962160
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ39_RS09310 (HUZ39_09245) | tsuB | 1936240..1936467 (+) | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| HUZ39_RS09315 (HUZ39_09250) | sbcB | 1936510..1937934 (-) | 1425 | WP_186178804.1 | exodeoxyribonuclease I | - |
| HUZ39_RS09320 (HUZ39_09255) | - | 1938116..1939294 (+) | 1179 | WP_104773793.1 | site-specific integrase | - |
| HUZ39_RS09325 (HUZ39_09260) | - | 1939275..1939466 (-) | 192 | WP_000132739.1 | AlpA family phage regulatory protein | - |
| HUZ39_RS09330 (HUZ39_09265) | - | 1939548..1939892 (-) | 345 | WP_024262601.1 | hypothetical protein | - |
| HUZ39_RS09335 (HUZ39_09270) | - | 1940067..1940231 (-) | 165 | WP_159195454.1 | DUF2737 family protein | - |
| HUZ39_RS09340 (HUZ39_09275) | - | 1940242..1940535 (-) | 294 | WP_072855028.1 | phage anti-RecBCD protein | - |
| HUZ39_RS09345 (HUZ39_09280) | ssb | 1941038..1941511 (-) | 474 | WP_015973878.1 | single-stranded DNA-binding protein | Machinery gene |
| HUZ39_RS09350 (HUZ39_09285) | - | 1941512..1942219 (-) | 708 | WP_033552097.1 | Rad52/Rad22 family DNA repair protein | - |
| HUZ39_RS09355 (HUZ39_09290) | - | 1942228..1942398 (-) | 171 | WP_016248933.1 | hypothetical protein | - |
| HUZ39_RS09360 (HUZ39_09295) | kil | 1942474..1942626 (-) | 153 | WP_001243355.1 | host cell division inhibitory peptide Kil | - |
| HUZ39_RS09365 (HUZ39_09300) | - | 1942611..1942742 (-) | 132 | WP_000638547.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| HUZ39_RS09370 (HUZ39_09305) | - | 1942767..1943735 (-) | 969 | WP_072855055.1 | cell envelope biogenesis protein TolA | - |
| HUZ39_RS09375 (HUZ39_09310) | - | 1943869..1944069 (-) | 201 | WP_000333101.1 | hypothetical protein | - |
| HUZ39_RS09380 (HUZ39_09315) | - | 1944069..1944320 (-) | 252 | WP_097680305.1 | hypothetical protein | - |
| HUZ39_RS09385 (HUZ39_09320) | - | 1944362..1944613 (-) | 252 | WP_239637977.1 | hypothetical protein | - |
| HUZ39_RS09390 (HUZ39_09325) | - | 1944582..1945643 (+) | 1062 | Protein_1847 | lytic transglycosylase domain-containing protein | - |
| HUZ39_RS09395 (HUZ39_09330) | - | 1945734..1946219 (-) | 486 | WP_000749291.1 | hypothetical protein | - |
| HUZ39_RS09400 (HUZ39_09335) | - | 1946290..1946556 (-) | 267 | WP_000287056.1 | Arc family DNA-binding protein | - |
| HUZ39_RS09405 | - | 1946678..1948954 (+) | 2277 | WP_228253194.1 | phage head-binding domain-containing protein | - |
| HUZ39_RS09410 (HUZ39_09345) | - | 1948984..1949919 (-) | 936 | WP_167823527.1 | acyltransferase family protein | - |
| HUZ39_RS09415 (HUZ39_09350) | dacD | 1951056..1952222 (+) | 1167 | WP_000830163.1 | serine-type D-Ala-D-Ala carboxypeptidase DacD | - |
| HUZ39_RS09420 (HUZ39_09355) | sbmC | 1952341..1952814 (+) | 474 | WP_001105393.1 | DNA gyrase inhibitor SbmC | - |
| HUZ39_RS09425 (HUZ39_09360) | - | 1953012..1954070 (+) | 1059 | WP_001200905.1 | FUSC family protein | - |
| HUZ39_RS09430 (HUZ39_09365) | - | 1954242..1954571 (+) | 330 | WP_000450409.1 | DUF496 family protein | - |
| HUZ39_RS09435 (HUZ39_09370) | - | 1954672..1954854 (-) | 183 | WP_001016348.1 | EutP/PduV family microcompartment system protein | - |
| HUZ39_RS09440 (HUZ39_09375) | - | 1954926..1955054 (+) | 129 | Protein_1857 | transposase domain-containing protein | - |
| HUZ39_RS09445 (HUZ39_09380) | - | 1955343..1955423 (-) | 81 | Protein_1858 | hypothetical protein | - |
| HUZ39_RS09450 (HUZ39_09385) | - | 1955469..1955663 (-) | 195 | WP_000988600.1 | DUF5983 family protein | - |
| HUZ39_RS09455 (HUZ39_09390) | cbtA | 1955660..1956034 (-) | 375 | WP_000854814.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | - |
| HUZ39_RS09460 (HUZ39_09395) | cbeA | 1956123..1956491 (-) | 369 | WP_001285585.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | - |
| HUZ39_RS09465 (HUZ39_09400) | - | 1956565..1956786 (-) | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| HUZ39_RS09470 (HUZ39_09405) | - | 1956849..1957325 (-) | 477 | WP_001186773.1 | RadC family protein | - |
| HUZ39_RS09475 (HUZ39_09410) | - | 1957341..1957820 (-) | 480 | WP_000860076.1 | antirestriction protein | - |
| HUZ39_RS09480 (HUZ39_09415) | - | 1957902..1958723 (-) | 822 | WP_001234530.1 | DUF932 domain-containing protein | - |
| HUZ39_RS09485 (HUZ39_09420) | - | 1958944..1959354 (-) | 411 | WP_000846713.1 | hypothetical protein | - |
| HUZ39_RS09490 (HUZ39_09425) | - | 1959370..1960052 (-) | 683 | Protein_1867 | hypothetical protein | - |
| HUZ39_RS09495 (HUZ39_09430) | - | 1960188..1961258 (-) | 1071 | WP_000102643.1 | patatin-like phospholipase family protein | - |
| HUZ39_RS09500 (HUZ39_09435) | - | 1961255..1962160 (-) | 906 | WP_000203545.1 | diguanylate cyclase regulator RdcB family protein | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17617.45 Da Isoelectric Point: 7.4024
>NTDB_id=456788 HUZ39_RS09345 WP_015973878.1 1941038..1941511(-) (ssb) [Shigella flexneri strain STEFF_3]
MASRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQRNNGQQQRQQSQQHGNHSEPPMNFDDSDIPF
MASRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQRNNGQQQRQQSQQHGNHSEPPMNFDDSDIPF
Nucleotide
Download Length: 474 bp
>NTDB_id=456788 HUZ39_RS09345 WP_015973878.1 1941038..1941511(-) (ssb) [Shigella flexneri strain STEFF_3]
ATGGCAAGCAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGGCATGATCCAGAAATCAGATATTCACCATCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAATGGCGTGATAAGCAAACTGGAGAGCAAAAGGAGCAGACGG
AGTGGCACCGCGTGGTAATGAGCGGGAAACTGGCAGAAATTGCCAGCGAATATCTGCGAAAAGGCTCTGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGCGGACAGGATCGGTTCACTACCGAAGTTATCGTAGGCGTTGG
TGGAACCATGCAAATGCTTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAACGGCCAGCAACAAA
GACAGCAATCTCAGCAGCATGGGAATCACAGCGAACCACCTATGAACTTCGACGATTCGGATATTCCGTTCTAG
ATGGCAAGCAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGGCATGATCCAGAAATCAGATATTCACCATCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAATGGCGTGATAAGCAAACTGGAGAGCAAAAGGAGCAGACGG
AGTGGCACCGCGTGGTAATGAGCGGGAAACTGGCAGAAATTGCCAGCGAATATCTGCGAAAAGGCTCTGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGCGGACAGGATCGGTTCACTACCGAAGTTATCGTAGGCGTTGG
TGGAACCATGCAAATGCTTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAACGGCCAGCAACAAA
GACAGCAATCTCAGCAGCATGGGAATCACAGCGAACCACCTATGAACTTCGACGATTCGGATATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
60.894 |
100 |
0.694 |
| ssb | Glaesserella parasuis strain SC1401 |
50.549 |
100 |
0.586 |
| ssb | Neisseria meningitidis MC58 |
41.243 |
100 |
0.465 |
| ssb | Neisseria gonorrhoeae MS11 |
41.243 |
100 |
0.465 |