Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUZ69_RS01295 Genome accession   NZ_CP055052
Coordinates   248254..248790 (+) Length   178 a.a.
NCBI ID   WP_239594012.1    Uniprot ID   -
Organism   Shigella dysenteriae strain SWHEFF_51     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 243254..253790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ69_RS01275 (HUZ69_01260) aphA 243542..244255 (+) 714 WP_001300837.1 acid phosphatase AphA -
  HUZ69_RS01280 (HUZ69_01265) - 244366..244782 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUZ69_RS01285 (HUZ69_01270) - 244786..245142 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HUZ69_RS01290 (HUZ69_01275) uvrA 245177..247999 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HUZ69_RS01295 (HUZ69_01280) ssb 248254..248790 (+) 537 WP_239594012.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUZ69_RS01300 (HUZ69_01285) - 248992..249468 (-) 477 WP_001121509.1 hypothetical protein -
  HUZ69_RS01305 (HUZ69_01290) - 249739..250020 (-) 282 WP_001295689.1 YjcB family protein -
  HUZ69_RS01310 (HUZ69_01295) pdeC 250449..252035 (+) 1587 WP_033814906.1 c-di-GMP phosphodiesterase PdeC -
  HUZ69_RS01315 (HUZ69_01300) soxS 252038..252361 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HUZ69_RS01320 (HUZ69_01305) soxR 252447..252911 (+) 465 WP_000412435.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18989.02 Da        Isoelectric Point: 5.2456

>NTDB_id=455954 HUZ69_RS01295 WP_239594012.1 248254..248790(+) (ssb) [Shigella dysenteriae strain SWHEFF_51]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTEQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=455954 HUZ69_RS01295 WP_239594012.1 248254..248790(+) (ssb) [Shigella dysenteriae strain SWHEFF_51]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGAACAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGCGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.747
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.59
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489