Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   I5P57_RS03480 Genome accession   NZ_CP066740
Coordinates   714263..714922 (-) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   Q3YXL4
Organism   Escherichia coli strain R12     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 709263..719922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5P57_RS03455 (I5P57_00680) - 710005..710952 (+) 948 WP_001296418.1 iron-siderophore ABC transporter substrate-binding protein -
  I5P57_RS03460 (I5P57_00681) - 710949..711836 (+) 888 WP_000614943.1 MurR/RpiR family transcriptional regulator -
  I5P57_RS03465 (I5P57_00682) ygiN 711881..712195 (-) 315 WP_000633738.1 putative quinol monooxygenase -
  I5P57_RS03470 (I5P57_00683) mdaB 712226..712807 (-) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  I5P57_RS03475 (I5P57_00684) qseC 712917..714266 (-) 1350 WP_000673390.1 quorum sensing histidine kinase QseC -
  I5P57_RS03480 (I5P57_00685) ciaR 714263..714922 (-) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  I5P57_RS03485 (I5P57_00686) ygiW 715074..715466 (+) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  I5P57_RS03490 (I5P57_00687) ygiV 715519..716001 (+) 483 WP_000183493.1 GyrI-like domain-containing protein -
  I5P57_RS03495 (I5P57_00688) ygiS 716110..717717 (+) 1608 WP_001764926.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24687.63 Da        Isoelectric Point: 6.9850

>NTDB_id=455787 I5P57_RS03480 WP_001221493.1 714263..714922(-) (ciaR) [Escherichia coli strain R12]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=455787 I5P57_RS03480 WP_001221493.1 714263..714922(-) (ciaR) [Escherichia coli strain R12]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTATATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCTGTATTGATCCTGACTGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGCAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACGCTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGCAGTGATTTTATTCGTACCGTGCATGGTATTGGCT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365