Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   JFL60_RS01525 Genome accession   NZ_CP066567
Coordinates   285378..285992 (+) Length   204 a.a.
NCBI ID   WP_075293664.1    Uniprot ID   A0A9Q6Z0E0
Organism   Histophilus somni strain ASc-MMNZ-VFA-079     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 280378..290992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL60_RS01510 (JFL60_01510) comP 280834..281514 (+) 681 WP_132995094.1 DUF2572 family protein Machinery gene
  JFL60_RS01515 (JFL60_01515) comQ 281537..281812 (+) 276 WP_411814732.1 DUF5374 domain-containing protein Machinery gene
  JFL60_RS01520 (JFL60_01520) recC 281865..285299 (+) 3435 WP_132995096.1 exodeoxyribonuclease V subunit gamma -
  JFL60_RS01525 (JFL60_01525) ruvA 285378..285992 (+) 615 WP_075293664.1 Holliday junction branch migration protein RuvA Machinery gene
  JFL60_RS01530 (JFL60_01530) ruvB 286003..287010 (+) 1008 WP_011608424.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  JFL60_RS01535 (JFL60_01535) - 287145..288353 (-) 1209 WP_012340582.1 NAD(P)/FAD-dependent oxidoreductase -
  JFL60_RS01540 (JFL60_01540) cmoB 288353..289318 (-) 966 WP_012340593.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  JFL60_RS01545 (JFL60_01545) putP 289321..290835 (-) 1515 WP_132995098.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22621.59 Da        Isoelectric Point: 8.0493

>NTDB_id=455675 JFL60_RS01525 WP_075293664.1 285378..285992(+) (ruvA) [Histophilus somni strain ASc-MMNZ-VFA-079]
MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHLLFGFSHKQDRSLFRELIKTNG
VGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKTAERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKPDQSLQ
LDEAVSALIALGYKPIEAEKMVKKVLKADLTSEQLIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=455675 JFL60_RS01525 WP_075293664.1 285378..285992(+) (ruvA) [Histophilus somni strain ASc-MMNZ-VFA-079]
ATGATTGGGCGTGTAACAGGAATACTGGTTGAAAAACAAGCTCCGGAAATTTTACTGGATGTTCAAGGTGTTGGGTATGA
GTTACTTTTACCCATGACAAGTTTTTATAATTTGCCGGAAGTTGGGCAGGAAACTACGTTGTTTACGCATTTTGTAGTGC
GTGAAGATGCTCATTTGTTATTTGGATTTAGCCATAAACAAGACCGCTCTTTATTTCGTGAATTGATTAAAACCAATGGA
GTTGGACCAAAATTAGCTTTAGCTATCCTGTCTGCGATGTCAGTGAATGAATTTGTGTATGCGATTGAACAAGAAGAATT
ATCTAAATTAGTCAAAATTCCCGGAGTAGGAAAAAAAACTGCTGAACGTTTATTGGTGGAGCTAAAAGGTAAATTTAAAG
GCTTACAACAAACAGATTTCTTTATTAAAAGCTCTCATTTACCTGGAATTAAATGCTCAAAACCGGATCAAAGTTTGCAG
TTGGATGAAGCAGTTTCTGCTTTAATTGCGTTAGGATATAAGCCTATTGAAGCAGAGAAAATGGTTAAAAAAGTGTTAAA
AGCAGATTTAACTAGTGAACAGCTTATTCGAGAGGCTTTGAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6Z0E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.321

100

0.382
  ruvA Streptococcus pneumoniae TIGR4

36.765

100

0.368
  ruvA Streptococcus pneumoniae R6

36.765

100

0.368
  ruvA Streptococcus pneumoniae D39

36.765

100

0.368