Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   JFL54_RS01525 Genome accession   NZ_CP066563
Coordinates   285109..285723 (+) Length   204 a.a.
NCBI ID   WP_198986681.1    Uniprot ID   -
Organism   Histophilus somni strain ASc-MMNZ-VFA-075     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 280109..290723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL54_RS01510 (JFL54_01510) comP 280565..281245 (+) 681 WP_132995094.1 DUF2572 family protein Machinery gene
  JFL54_RS01515 (JFL54_01515) comQ 281226..281543 (+) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  JFL54_RS01520 (JFL54_01520) recC 281596..285030 (+) 3435 WP_132995096.1 exodeoxyribonuclease V subunit gamma -
  JFL54_RS01525 (JFL54_01525) ruvA 285109..285723 (+) 615 WP_198986681.1 Holliday junction branch migration protein RuvA Machinery gene
  JFL54_RS01530 (JFL54_01530) ruvB 285734..286741 (+) 1008 WP_011608424.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  JFL54_RS01535 (JFL54_01535) - 286876..288084 (-) 1209 WP_012340582.1 NAD(P)/FAD-dependent oxidoreductase -
  JFL54_RS01540 (JFL54_01540) cmoB 288084..289049 (-) 966 WP_012340593.1 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB -
  JFL54_RS01545 (JFL54_01545) putP 289052..290566 (-) 1515 WP_132995098.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22607.56 Da        Isoelectric Point: 8.0493

>NTDB_id=455455 JFL54_RS01525 WP_198986681.1 285109..285723(+) (ruvA) [Histophilus somni strain ASc-MMNZ-VFA-075]
MIGRVTGILVEKQAPEILLDVQGVGYELLLPMTSFYNLPEVGQETTLFTHFVVREDAHVLFGFSHKQDRSLFRELIKTNG
VGPKLALAILSAMSVNEFVYAIEQEELSKLVKIPGVGKKTAERLLVELKGKFKGLQQTDFFIKSSHLPGIKCSKPDQSLQ
LDEAVSALIALGYKPIEAEKMVKKVLKADLTSEQLIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=455455 JFL54_RS01525 WP_198986681.1 285109..285723(+) (ruvA) [Histophilus somni strain ASc-MMNZ-VFA-075]
ATGATTGGGCGTGTAACAGGAATACTGGTTGAAAAACAAGCTCCGGAAATTTTACTGGATGTTCAAGGTGTTGGGTATGA
GTTACTTTTACCCATGACAAGTTTTTATAATTTGCCGGAAGTTGGGCAGGAAACTACGTTGTTTACGCATTTTGTAGTGC
GTGAAGATGCTCATGTGTTATTTGGATTTAGCCATAAACAAGACCGCTCTTTATTTCGTGAATTGATTAAAACCAATGGA
GTTGGACCAAAATTAGCTTTAGCTATCCTGTCTGCGATGTCAGTGAATGAATTTGTGTATGCGATTGAACAAGAAGAATT
ATCTAAATTAGTCAAAATTCCCGGAGTAGGAAAAAAAACTGCTGAACGTTTATTGGTGGAGCTAAAAGGTAAATTTAAAG
GCTTACAACAAACAGATTTCTTTATTAAAAGCTCTCATTTACCTGGAATTAAATGCTCAAAACCGGATCAAAGTTTGCAG
TTGGATGAAGCAGTTTCTGCTTTAATTGCGTTAGGATATAAGCCTATTGAAGCAGAGAAAATGGTTAAAAAAGTGTTAAA
AGCAGATTTAACTAGTGAACAGCTTATTCGAGAGGCTTTGAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.321

100

0.382
  ruvA Streptococcus pneumoniae TIGR4

36.275

100

0.363
  ruvA Streptococcus pneumoniae R6

36.275

100

0.363
  ruvA Streptococcus pneumoniae D39

36.275

100

0.363