Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HUW52_RS05965 Genome accession   NZ_CP054880
Coordinates   1352976..1354322 (-) Length   448 a.a.
NCBI ID   WP_016986217.1    Uniprot ID   A0A7H8GFF1
Organism   Pseudomonas sp. 43A     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1347976..1359322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW52_RS05950 (HUW52_05950) - 1348202..1351285 (+) 3084 WP_175553175.1 pilus assembly protein -
  HUW52_RS05955 (HUW52_05955) - 1351301..1351702 (+) 402 WP_016986215.1 type IV pilin protein -
  HUW52_RS05960 (HUW52_05960) thiO 1351760..1352860 (+) 1101 WP_016986216.1 glycine oxidase ThiO -
  HUW52_RS05965 (HUW52_05965) pilR 1352976..1354322 (-) 1347 WP_016986217.1 sigma-54 dependent transcriptional regulator Regulator
  HUW52_RS05970 (HUW52_05970) pilS 1354319..1355908 (-) 1590 WP_175555645.1 PAS domain-containing sensor histidine kinase Regulator
  HUW52_RS05975 (HUW52_05975) - 1355898..1356140 (-) 243 WP_175553176.1 PP0621 family protein -
  HUW52_RS05980 (HUW52_05980) - 1356267..1357283 (-) 1017 WP_007909854.1 outer membrane protein assembly factor BamD -
  HUW52_RS05985 (HUW52_05985) rluD 1357435..1358397 (+) 963 WP_016986220.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HUW52_RS05990 (HUW52_05990) pgeF 1358394..1359116 (+) 723 WP_175553177.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50174.55 Da        Isoelectric Point: 6.4120

>NTDB_id=455253 HUW52_RS05965 WP_016986217.1 1352976..1354322(-) (pilR) [Pseudomonas sp. 43A]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLAEAQALLDREKFDLCLTDMRLPDGTGLELVQHIQQRYSQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAAGGSFTSIDRRLLGDSPPMRILRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPTELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQESVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPPLRERRDDIEVLA
ANMLKRLAKDSAQPVARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAEDLRLSEGNCAADGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=455253 HUW52_RS05965 WP_016986217.1 1352976..1354322(-) (pilR) [Pseudomonas sp. 43A]
TTGAACACGAGCCCACGGCAAAAAATTCTTATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTACAGCGCGCGTAATCTGGCTGAAGCCCAAGCGCTGCTGGACCGCGAGAAATTCGATCTGT
GCCTGACAGACATGCGCCTGCCCGATGGTACCGGGCTAGAGTTGGTGCAGCACATCCAGCAACGCTATTCACAACTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACGGCCATCAACGCTTTGAAAGCAGGTGCTTTCGACTTCCTCACCAA
ACCGGTGGACCTCACTCGTTTGCGCGAACTGGTCGGCACCGCCCTGCGTATGCCGGCGGCGGGAGGCAGCTTTACCTCCA
TCGATCGGCGCTTGCTCGGTGATTCGCCACCGATGCGCATTCTGCGCAAGCAAATCGACAAACTCGCTCGCAGTCAGGCG
CCGGTGTACATCAGCGGCGAATCGGGCAGTGGCAAGGAACTGGTTGCGCGCCTGATTCATGAACAGGGGCCGCGCGCCAG
CCAGCCGTTCGTACCGGTGAACTGCGGAGCGATCCCGACGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGTAAAGGCA
GTTTCACCGGCGCGGTCGAGGACAAGCCCGGGTTATTTCAGGCAGCCCATGGCGGCACGTTGTTTCTCGATGAAGTGGCG
GACTTGCCGTTGTCGATGCAGGTGAAGTTACTGCGCGCGATTCAGGAAAAAGCCGTGCGCAGTGTCGGCGGCCAGCAGGA
AAGCGTGGTCGATGTGCGGATTCTCTGCGCCACGCACAAGGATCTCGATGCAGAGGTCGCGGCCGAACGCTTTCGTCAGG
ATCTTTATTACCGCCTGAACGTGATTGAATTGCGCGTGCCGCCCCTGCGTGAGCGCCGTGATGACATTGAAGTGCTGGCG
GCCAATATGCTCAAGCGTTTGGCCAAGGACAGTGCTCAGCCCGTTGCGCGCCTTCATCCACAGGCGCTGGAAGCGTTGAA
AAATTACCGGTTTCCGGGGAATGTGCGGGAGCTGGAGAACGTGCTTGAGCGGGCACACACCTTGTGTGAAAACCGCACGA
TCGAGGCTGAAGATTTACGTCTGAGCGAAGGCAACTGCGCGGCGGACGGCGGGATTGCCGATCTGACGCAGATCGACAAT
CTGGAAGATTATCTGGAGAACGTCGAGAGGAAGCTGATCTTGCAGGCGCTGGAAGAAACACGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGTCTTTCGTTTCGTTCGATGCGCTATCGGCTGAAGAAACTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8GFF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.233

98.884

0.783
  pilR Acinetobacter baumannii strain A118

48.802

100

0.5