Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   JFL49_RS05695 Genome accession   NZ_CP066558
Coordinates   1206482..1207822 (+) Length   446 a.a.
NCBI ID   WP_075293827.1    Uniprot ID   A0A9Q7E403
Organism   Histophilus somni strain ASc-MMNZ-VFA-070     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1201482..1212822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL49_RS05670 (JFL49_05670) - 1202234..1202956 (-) 723 WP_011608971.1 phosphotransferase -
  JFL49_RS05675 (JFL49_05675) - 1203089..1203565 (+) 477 WP_041604159.1 low molecular weight protein-tyrosine-phosphatase -
  JFL49_RS05680 (JFL49_05680) - 1203650..1205038 (-) 1389 WP_011608969.1 Do family serine endopeptidase -
  JFL49_RS05685 (JFL49_05685) - 1205167..1205580 (-) 414 WP_012340443.1 YhcB family protein -
  JFL49_RS05690 (JFL49_05690) lolA 1205802..1206416 (+) 615 WP_011608967.1 outer membrane lipoprotein chaperone LolA -
  JFL49_RS05695 (JFL49_05695) rarA 1206482..1207822 (+) 1341 WP_075293827.1 replication-associated recombination protein A Machinery gene
  JFL49_RS05700 (JFL49_05700) - 1207875..1208483 (-) 609 WP_011608965.1 riboflavin synthase -
  JFL49_RS05705 (JFL49_05705) - 1208537..1209931 (+) 1395 WP_075293826.1 MATE family efflux transporter -
  JFL49_RS05710 (JFL49_05710) hemA 1209943..1211244 (-) 1302 WP_075293825.1 glutamyl-tRNA reductase -
  JFL49_RS05715 (JFL49_05715) gloB 1211355..1212056 (-) 702 WP_075293824.1 hydroxyacylglutathione hydrolase -
  JFL49_RS05720 (JFL49_05720) - 1212090..1212815 (+) 726 WP_011608961.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49875.08 Da        Isoelectric Point: 7.1419

>NTDB_id=455254 JFL49_RS05695 WP_075293827.1 1206482..1207822(+) (rarA) [Histophilus somni strain ASc-MMNZ-VFA-070]
MSSFSLDFSLGTFQPLAAKMRPQTLKQYCGQEHLIGAGKPLYKAIENGHIHSMIFWGPPGTGKTTLAEIIAQQIHAQVER
ISAVTAGVKEIRESVERAKQNRLMGQQTILFVDEVHRFNKSQQDAFLPHIENGTIIFIGATTENPSFELNNALLSRVKVY
ILKPLTTSNIVTVLQNAIQDAEQGLGKERLIFAENVLETLAEYVNGDARLALNCLELMVDMADETEKGKLINHHLLTEVL
GERQARFDKQGDRFYDLISALHKSIRGSAPDAALYWYARIITAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAAEGERAIAQAIVYLAVAPKSNAVYVAFKQAKKLAKEMPDYDVPVHLRNAPTHLMKELGYGAEYRYAHDEPNAYAA
GEIYFPEELKNTKFYFPTDRGLEIQLKEKLARLHNLDEQSTKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=455254 JFL49_RS05695 WP_075293827.1 1206482..1207822(+) (rarA) [Histophilus somni strain ASc-MMNZ-VFA-070]
ATGTCCAGCTTTTCACTTGATTTCTCTCTCGGTACATTTCAACCGTTAGCCGCAAAAATGAGACCGCAAACACTGAAGCA
ATATTGTGGCCAAGAACATTTAATCGGAGCTGGAAAGCCACTATATAAAGCCATTGAAAACGGACATATTCATTCTATGA
TTTTTTGGGGCCCGCCTGGTACAGGAAAAACAACGCTGGCAGAGATTATTGCACAACAAATTCATGCTCAAGTTGAGCGT
ATTTCTGCAGTTACCGCCGGAGTGAAAGAGATTCGGGAAAGTGTTGAACGGGCAAAACAAAATCGTTTAATGGGTCAACA
AACTATTTTATTTGTTGATGAAGTTCACCGTTTTAATAAAAGCCAACAAGATGCTTTTTTGCCCCATATTGAAAATGGCA
CTATCATTTTTATAGGTGCAACCACAGAAAATCCATCATTTGAATTAAATAATGCGTTACTCTCTCGTGTCAAAGTTTAT
ATTTTGAAACCTTTAACTACATCTAATATTGTGACAGTGTTACAAAATGCTATCCAAGATGCAGAGCAAGGATTGGGAAA
AGAGCGGTTGATTTTCGCTGAAAATGTTCTTGAAACCTTAGCTGAATATGTCAATGGGGATGCCCGTTTAGCACTAAATT
GTTTAGAACTCATGGTGGATATGGCAGATGAAACAGAAAAAGGGAAATTGATTAATCATCATCTCCTAACCGAAGTATTA
GGGGAACGACAGGCTCGCTTCGACAAGCAAGGGGATCGCTTTTATGATCTAATTTCCGCTCTACATAAATCTATTCGTGG
CTCCGCTCCCGATGCTGCTTTATATTGGTATGCTAGAATTATTACTGCCGGAGGTGATCCTCTCTATGTTGCAAGGCGTT
TATTAGCTATTGCCTCCGAAGACGTAGGGAATGCCGATCCGAGAGCAATGCAAGTAGCACTTGCAGCATGGGATTGTTTT
ACTCGAGTTGGTGCAGCTGAAGGAGAACGTGCTATCGCACAAGCGATTGTATATTTAGCTGTTGCACCAAAAAGTAACGC
TGTATATGTTGCCTTTAAACAAGCAAAAAAACTCGCAAAAGAAATGCCGGATTATGATGTACCGGTACATTTACGTAATG
CACCAACTCATTTAATGAAAGAGTTGGGATATGGAGCAGAATATCGTTATGCTCATGATGAACCTAATGCCTATGCAGCA
GGAGAAATTTATTTTCCAGAAGAATTAAAAAATACGAAATTTTATTTTCCTACAGATCGTGGACTGGAAATTCAACTTAA
AGAAAAATTAGCACGATTGCATAATTTAGATGAGCAAAGCACAAAAAAACGCTATAAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-163)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

AAA C-terminal domain (AAA_assoc_2)

(188-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q7E403

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.007

94.843

0.37