Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HUW52_RS05970 Genome accession   NZ_CP054880
Coordinates   1354319..1355908 (-) Length   529 a.a.
NCBI ID   WP_175555645.1    Uniprot ID   -
Organism   Pseudomonas sp. 43A     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1349319..1360908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW52_RS05955 (HUW52_05955) - 1351301..1351702 (+) 402 WP_016986215.1 type IV pilin protein -
  HUW52_RS05960 (HUW52_05960) thiO 1351760..1352860 (+) 1101 WP_016986216.1 glycine oxidase ThiO -
  HUW52_RS05965 (HUW52_05965) pilR 1352976..1354322 (-) 1347 WP_016986217.1 sigma-54 dependent transcriptional regulator Regulator
  HUW52_RS05970 (HUW52_05970) pilS 1354319..1355908 (-) 1590 WP_175555645.1 PAS domain-containing sensor histidine kinase Regulator
  HUW52_RS05975 (HUW52_05975) - 1355898..1356140 (-) 243 WP_175553176.1 PP0621 family protein -
  HUW52_RS05980 (HUW52_05980) - 1356267..1357283 (-) 1017 WP_007909854.1 outer membrane protein assembly factor BamD -
  HUW52_RS05985 (HUW52_05985) rluD 1357435..1358397 (+) 963 WP_016986220.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HUW52_RS05990 (HUW52_05990) pgeF 1358394..1359116 (+) 723 WP_175553177.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58322.79 Da        Isoelectric Point: 6.3894

>NTDB_id=455254 HUW52_RS05970 WP_175555645.1 1354319..1355908(-) (pilS) [Pseudomonas sp. 43A]
MIAEASSADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRGGSWLYLILNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFFAAGGVGSALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGSSFLLSFNHPLSANEYLQAGTLG
ALCFAASLLVQGLISRLEVSETLAEKRASEVVGLEALNALILQRMRTGILVLDEAHRVQLANHSAQTLLAQSHLQGHLID
DYSPALVERLQLWMNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQISQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQASER
QEIHLRINSGDFTTLMDPNQLTQILDNLLRNGWRHSALLHDQAQVWLALFSDPDSQLAVLEVQDNGPGVPADEQTHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFQSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=455254 HUW52_RS05970 WP_175555645.1 1354319..1355908(-) (pilS) [Pseudomonas sp. 43A]
GTGATCGCTGAGGCCTCCAGCGCCGACAGCAAACAGGCGCAGCGCCTGCTGCGCCTTTATCATCTCTACCGTTTAAGCGT
CGGTATCACGCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGAATTGCTGCGCG
GCGGCAGTTGGCTGTACCTGATTCTCAACATTCTGTTGGTGGTATTCCTCGAGAACACGCGACGGCCGGCGCAACTGTTC
AGCCTGGCCCTCGTCGATGTCCTGCTTTTATGCGGATTGTTCTTCGCTGCCGGTGGCGTTGGCAGTGCCCTGGGCAATCT
GCTGATTGTCTCGGTGGCGATCAGCAACACCCTGCTGCGGCGGCGCATCGGCCTGTTGATTGCCGCGATCGGTGCGCTGG
GCATCGTTGGTTCGAGTTTTCTGTTGAGTTTCAACCACCCCCTGAGCGCCAATGAATACCTGCAGGCCGGCACCCTCGGT
GCACTGTGCTTTGCCGCGTCGTTGCTGGTGCAAGGGCTGATCAGTCGCCTCGAAGTCAGCGAAACACTCGCCGAAAAACG
CGCCAGCGAAGTCGTCGGCCTCGAAGCCCTCAACGCACTTATCCTGCAACGCATGCGCACCGGCATTCTCGTGCTCGACG
AGGCGCATCGGGTGCAGTTGGCCAACCACAGCGCGCAAACCCTGCTCGCGCAATCGCATCTTCAAGGACACCTGATCGAT
GACTATTCGCCGGCGCTGGTCGAGCGCCTGCAACTGTGGATGAACAACCCGACCTTGCGCCCACAGAGCCTGAAAATCCC
CGGCAATGGCCTCGAGCTGCAACCGAGTTTCATCGCCCTCGAACAAAGCCCAAACCAGCAAACCCTGGTGTTTCTCGAAG
ACCTCGCGCAAATCAGCCAACAAGCTCAGCAATTGAAACTGGCTGCGCTGGGGCGACTGACCGCTGGGATCTCCCACGAA
ATTCGCAATCCGCTGGGTGCCATCAGTCATGCCGCGCAGCTATTGGCTGAATCCGAGGAACTCGATGGCGCGGATCGACG
TCTGACACAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAATTGTCCCGCCGCCAAC
AGAGCGCGCCGCAACGGCTGGATCTCAAGCCGTGGCTGGAAAACTTCGTTGCCGAAAGCCGCGAACAGGCCTCCGAGCGC
CAGGAAATTCATCTGCGGATCAATTCGGGGGACTTCACCACGCTGATGGACCCCAACCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGCGCCCTGCTGCACGATCAGGCGCAAGTCTGGCTGGCCCTGTTCAGCGATCCCG
ACAGCCAGTTGGCGGTCCTCGAAGTGCAGGACAACGGCCCCGGCGTCCCGGCCGATGAACAGACGCATCTGTTCGAACCG
TTTTTCACCACCAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTTCAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.599