Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   IGS65_RS07220 Genome accession   NZ_CP066294
Coordinates   1458334..1458927 (-) Length   197 a.a.
NCBI ID   WP_002262395.1    Uniprot ID   Q8CWW3
Organism   Streptococcus mutans strain 27-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1453334..1463927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS07190 (IGS65_007190) - 1453596..1453807 (-) 212 Protein_1408 hypothetical protein -
  IGS65_RS07195 (IGS65_007195) - 1453936..1454361 (-) 426 WP_002266116.1 hypothetical protein -
  IGS65_RS07200 (IGS65_007200) spx 1454613..1455011 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  IGS65_RS07205 (IGS65_007205) recA 1455096..1456247 (-) 1152 WP_002288707.1 recombinase RecA Machinery gene
  IGS65_RS07210 (IGS65_007210) cinA 1456287..1457543 (-) 1257 WP_002266115.1 competence/damage-inducible protein A Machinery gene
  IGS65_RS07215 (IGS65_007215) - 1457692..1458252 (-) 561 WP_002268198.1 DNA-3-methyladenine glycosylase I -
  IGS65_RS07220 (IGS65_007220) ruvA 1458334..1458927 (-) 594 WP_002262395.1 Holliday junction branch migration protein RuvA Machinery gene
  IGS65_RS07225 (IGS65_007225) hexB 1459110..1461065 (-) 1956 WP_192072428.1 DNA mismatch repair endonuclease MutL Machinery gene
  IGS65_RS07230 (IGS65_007230) - 1461290..1461569 (+) 280 Protein_1416 transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21896.11 Da        Isoelectric Point: 5.6313

>NTDB_id=454615 IGS65_RS07220 WP_002262395.1 1458334..1458927(-) (ruvA) [Streptococcus mutans strain 27-3]
MYDYIKGNLTKITAKYIVLETGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=454615 IGS65_RS07220 WP_002262395.1 1458334..1458927(-) (ruvA) [Streptococcus mutans strain 27-3]
ATGTACGATTATATTAAAGGGAATTTAACCAAAATTACAGCTAAATATATTGTCTTAGAAACTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACTGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8CWW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

72.081

100

0.721
  ruvA Streptococcus pneumoniae D39

72.081

100

0.721
  ruvA Streptococcus pneumoniae TIGR4

72.081

100

0.721
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411