Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   I33_RS18100 Genome accession   NC_017195
Coordinates   3650348..3650467 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3645348..3655467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS18075 (I33_3888) albG 3645511..3646212 (+) 702 WP_014478292.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  I33_RS18080 (I33_3889) ywhL 3646218..3647594 (-) 1377 WP_014478293.1 YncE family protein -
  I33_RS18085 (I33_3890) ywhK 3647634..3648989 (-) 1356 WP_014478294.1 YncE family protein -
  I33_RS21540 (I33_3891) - 3648986..3649216 (-) 231 WP_041519575.1 hypothetical protein -
  I33_RS18095 (I33_3892) rapF 3649219..3650364 (+) 1146 WP_014478296.1 response regulator aspartate phosphatase RapF Regulator
  I33_RS18100 phrF 3650348..3650467 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  I33_RS18105 (I33_3893) ywhH 3650566..3651039 (+) 474 Protein_3645 YbaK/EbsC family protein -
  I33_RS18110 (I33_3894) speB 3651070..3651942 (-) 873 WP_003227545.1 agmatinase -
  I33_RS18115 (I33_3895) speE 3652003..3652833 (-) 831 WP_003227543.1 spermidine synthase -
  I33_RS18120 (I33_3896) pbpG 3653036..3655111 (+) 2076 WP_014478298.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=45448 I33_RS18100 WP_009968329.1 3650348..3650467(+) (phrF) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=45448 I33_RS18100 WP_009968329.1 3650348..3650467(+) (phrF) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATCTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment