Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   I33_RS17105 Genome accession   NC_017195
Coordinates   3443525..3444214 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3438525..3449214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS17070 (I33_3671) flgN 3438706..3439188 (-) 483 WP_014478127.1 flagellar protein FlgN -
  I33_RS17075 (I33_3672) flgM 3439204..3439470 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  I33_RS17080 (I33_3673) yvyF 3439551..3439970 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  I33_RS17085 (I33_3674) comFC 3440043..3440765 (-) 723 WP_014478129.1 comF operon protein ComFC Machinery gene
  I33_RS17090 (I33_3675) comFB 3440729..3441025 (-) 297 WP_014478130.1 late competence protein ComFB -
  I33_RS17095 (I33_3676) comFA 3441085..3442476 (-) 1392 WP_014478131.1 ATP-dependent helicase ComFA Machinery gene
  I33_RS17100 (I33_3677) fakBA 3442582..3443427 (-) 846 WP_014478132.1 DegV family protein -
  I33_RS17105 (I33_3678) degU 3443525..3444214 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I33_RS17110 (I33_3679) degS 3444297..3445454 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  I33_RS17115 (I33_3680) yvyE 3445671..3446324 (+) 654 WP_003227979.1 YigZ family protein -
  I33_RS17120 (I33_3681) tagV 3446324..3447490 (+) 1167 WP_014478133.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  I33_RS17125 (I33_3682) tagO 3447563..3448639 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=45442 I33_RS17105 WP_003219701.1 3443525..3444214(-) (degU) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=45442 I33_RS17105 WP_003219701.1 3443525..3444214(-) (degU) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAGGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment