Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   I33_RS17085 Genome accession   NC_017195
Coordinates   3440043..3440765 (-) Length   240 a.a.
NCBI ID   WP_014478129.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3435043..3445765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS17050 (I33_3667) fliW 3435183..3435614 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  I33_RS17055 (I33_3668) yviE 3435635..3436210 (-) 576 WP_014478125.1 DUF6470 family protein -
  I33_RS17060 (I33_3669) flgL 3436257..3437153 (-) 897 WP_014478126.1 flagellar hook-associated protein FlgL -
  I33_RS17065 (I33_3670) flgK 3437164..3438687 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  I33_RS17070 (I33_3671) flgN 3438706..3439188 (-) 483 WP_014478127.1 flagellar protein FlgN -
  I33_RS17075 (I33_3672) flgM 3439204..3439470 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  I33_RS17080 (I33_3673) yvyF 3439551..3439970 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  I33_RS17085 (I33_3674) comFC 3440043..3440765 (-) 723 WP_014478129.1 comF operon protein ComFC Machinery gene
  I33_RS17090 (I33_3675) comFB 3440729..3441025 (-) 297 WP_014478130.1 late competence protein ComFB -
  I33_RS17095 (I33_3676) comFA 3441085..3442476 (-) 1392 WP_014478131.1 ATP-dependent helicase ComFA Machinery gene
  I33_RS17100 (I33_3677) fakBA 3442582..3443427 (-) 846 WP_014478132.1 DegV family protein -
  I33_RS17105 (I33_3678) degU 3443525..3444214 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I33_RS17110 (I33_3679) degS 3444297..3445454 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27516.81 Da        Isoelectric Point: 9.3102

>NTDB_id=45440 I33_RS17085 WP_014478129.1 3440043..3440765(-) (comFC) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFKGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=45440 I33_RS17085 WP_014478129.1 3440043..3440765(-) (comFC) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAA
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment